Philipp Schlegel

I fixed the issue in `geodesic_matrix` with a5d4b72b439b0df6eb75e865167963287e15ad23 but your point is still well taken. We could probably just rip out the alternative `networkx`-based implementations that exist in some of...

Oh I guess you mentioned yourself that we could test that results from `igraph`- and `networkx`-based implementations have the same result?

Cool! I saw you making the `morphlink` repo. I definitely want to take it for a spin and see if I can use it in `navis`. The current syncing between...

Hi. Looks like you asked almost the same question in #4. You seem to have already found the `.save_swc()` method. SWC is a commonly used format to store skeletons (see...

No problem. The question is not whether there is a way to save the skeleton - there are plenty. The question is rather what you want to do with them...

> I would like to optimize the skeleton line and calculate the length of the extracted skeleton line. That's fair enough. I might have recommended you use [navis](https://github.com/navis-org/navis) for this....

Hi & thanks for the report! I will have a look at the issues with the header and channel. Re 2d tiffs: `navis.read_swc` will (primarily) try to turn the image...

I think I have already fixed the header and channel errors in the `fix_tiff` branch. See [this](https://github.com/navis-org/navis/compare/master...fix_tiff) commit. It also introduces a couple of sanity checks such as checking that...

Actually, since your data is segmented, you should be able to generate a mesh using marching cubes, read that into `NAVis` and then skeletonize it. Again, would be helpful to...

That all sounds good. Just let me know if you have any such data that you can share. For what it's worth: if you already have an array, you can...