Philipp Schlegel

Results 249 comments of Philipp Schlegel

Hi! Unless otherwise specified, `CatmaidInstance` connects to the project with id `1` which doesn't seem to exist on this server. I should probably make this easier in `pymaid` but at...

Small addendum: you can connect to a server and then figure out the project ID ```Python >>> rm = pymaid.CatmaidInstance( server="https://catmaid.jekelylab.ex.ac.uk/#", api_token=None, http_user=None, http_password=None ) >>> # Look at available...

Jasper is likely correct: this looks like a confusion with the packages to me. To confirm, could you send us the output of this: ```Python import fafbseg import pymaid print(fafbseg.__version__)...

OK, that looks like you accidentally installed the other pymaid. Try this: ```bash pip3 uninstall pymaid pip3 install python-catmaid -U ```

Ah right: you will also need to update fafbseg. The bottom line is this: `pymaid` is as of version 1.0.0 fully dependent on `navis`. `pymaid` retains all CATMAID-specific functions like...

> for example, it now does not require you to set a source for the segmentation anymore. That's what I meant here: you don't need to set a segmentation source...

That's very strange. I suspect you are looking at some cached version. This is what the examples page should look like: ![Screenshot 2020-12-22 at 22 23 05](https://user-images.githubusercontent.com/7161148/102938561-6da83e80-44a4-11eb-9962-2157e5f41987.png) Can you send...

OK that looks like a bug - I will check that. Re the docs: try [deep reload](https://www.getfilecloud.com/blog/2015/03/tech-tip-how-to-do-hard-refresh-in-browsers/#.X-NeNen7R24) to clear your cache.

Turns out this was an error on my part in `pymaid.get_node_table` which messed up the data types. Surprised this didn't come up earlier... I have pushed a new version `2.0.2`...