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libSBML with R bindings does not compile on Manjaro Archlinux

Open SeverinBang opened this issue 10 months ago • 3 comments

Installing libSBML 5.20.2 in R does fail with non specific error message:

Image

I downloaded the latest .tar.gz file with R bindings (5.20.2) from https://github.com/sbmlteam/libsbml/releases/tag/v5.20.2 and started the install process via

install.packages("./libSBML_5.20.2.tar.gz", repos = NULL, type = "source")

The installation failed with above mentioned error message (some hundred lines of error messages are omitted). Other older versions which worked in the past are also not installable.

System information: Manjaro Archlinux Linux 6.12.4-1 Kernel gcc 14.2.1 libxml 2.13.5-1

SeverinBang avatar Jan 22 '25 08:01 SeverinBang

it seems like the SWIG generated code no longer compiles because warnings are treated as errors. I'll see what can be done, though it might have to wait until next week. @SeverinBang , do you perhaps know which swig version is being used

swig -version

thanks

fbergmann avatar Jan 22 '25 09:01 fbergmann

swig was not installed when opening the issue. I installed it and tried the install process again, and it failed the same way. `swig -version

SWIG Version 4.2.1

Compiled with g++ [x86_64-pc-linux-gnu]

Configured options: +pcre `

SeverinBang avatar Jan 22 '25 09:01 SeverinBang

Just to let you know, i've started on this, so far build seem to work fine from this Repo, i'll do some more testing

fbergmann avatar Jan 28 '25 15:01 fbergmann