libsbml
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Published
20 hours ago •
sbmlteam
sbmlteam
Failed Perl binding test
Hi all.
Test for Perl-5.36 binding is failing:
Start 31: test_perl_binding
31: Test command: /usr/bin/perl "-I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl" "-I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl" "-MExtUtils::Command::MM" "-e" "test_harness(0)" "/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/*.t"
31: Environment variables:
31: LD_LIBRARY_PATH=/usr/lib/:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl/../..:
31: Test timeout computed to be: 3000
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/01__LoadModule.t ................ ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/02__CreateDocument.t ............ ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/02__ReadFromFile.t .............. ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/02__ReadFromFileL3.t ............ ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/02__WriteToFile.t ............... ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/02__WriteToFileL3.t ............. ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/03__ChangeValues.t .............. ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/03__DowncastRule.t .............. ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/03__DowncastSBase.t ............. ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/03__DowncastSBaseL3.t ........... ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/04__ListOf.t .................... ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/04__ListOfL3.t .................. ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/05__AlgebraicRule.t ............. ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/05__AssignmentRule.t ............ ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/05__AssignmentRuleL3.t .......... ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/05__Compartment.t ............... ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/05__CompartmentL3.t ............. ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/05__CompartmentVolumeRule.t ..... ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/05__Event.t ..................... ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/05__EventAssignment.t ........... ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/05__EventL3.t ................... ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/05__Formula.t ................... ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/05__FunctionDefinition.t ........ ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/05__KineticLaw.t ................ ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/05__KineticLawL3.t .............. ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/05__Model.t ..................... ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/05__ModelL3.t ................... ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/05__ModifierSpeciesReference.t .. ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/05__Parameter.t ................. ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/05__ParameterL3.t ............... ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/05__ParameterRule.t ............. ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/05__RateRule.t .................. ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/05__SBMLDocument.t .............. ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/05__SBMLDocumentVerbose.t ....... ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/06__TestReadSBML.t ..............
31: Failed 252/425 subtests
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/06__TestReadSBMLL3.t ............ ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/06__TestWriteSBML.t .............
31: All 72 subtests passed
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/06__TestWriteSBMLL3.t ........... ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/07__TestCVTerms.t ............... ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/07__TestModelHistory.t .......... ok
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/07__TestRDFAnnotation2.t ........ ok
31:
31: Test Summary Report
31: -------------------
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/06__TestReadSBML.t (Wstat: 139 (Signal: SEGV, dumped core) Tests: 173 Failed: 0)
31: Non-zero wait status: 139
31: Parse errors: Bad plan. You planned 425 tests but ran 173.
31: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/t/06__TestWriteSBML.t (Wstat: 139 (Signal: SEGV, dumped core) Tests: 72 Failed: 0)
31: Non-zero wait status: 139
31: Files=41, Tests=3112, 6 wallclock secs ( 0.17 usr 0.04 sys + 4.78 cusr 0.58 csys = 5.57 CPU)
31: Result: FAIL
31: Failed 2/41 test programs. 0/3112 subtests failed.
31/71 Test #31: test_perl_binding .............................***Failed 6.04 sec
Full build log: https://kojipkgs.fedoraproject.org//work/tasks/6859/87826859/build.log
thanks for letting us know, i do suspect a swig issue here. We've encountered SWIG being needed in different versions for different target languages. We build python with SWIG 4.0.x, but Java with 3.0.12. Could it be that PERL requires a different version too?
