Sue Bello
Not a high priority, this was caught by the usual QC, but it did look messy
Anna and I took a look at this today, looking at this example Phenotypes: DDPHENO:0000171 (increased growth rate) UPHENO:0084229 (increased asexual reproduction) ZP:0131161 (growth increased rate, abnormal) UPHENO:0054968 (increased growth)...
Warning: multiple UPHENO IDs found for group FBcv:0000390 (decreased rate of movement), UPHENO:0084424 (decreased rate of kinesthetic behavior), UPHENO:0005521 (decreased multicellular organismal movement), MP:0031392 (hypoactivity): ------------------------- Phenotypes: UPHENO:0005521 (decreased multicellular...
Warning: multiple UPHENO IDs found for group HP:0000104 (Renal agenesis), UPHENO:0008593 (absent kidney), MP:0000520 (absent kidney), XPO:0125089 (absent kidney), UPHENO:0026980 (absent kidney in the renal system), HP:0010958 (Bilateral renal agenesis):...
Warning: multiple UPHENO IDs found for group UPHENO:0081236 (skeleton of lower jaw hypoplasia), UPHENO:0069249 (decreased size of the mandible), UPHENO:0069414 (decreased size of the jaw skeleton), ZP:0003955 (ventral mandibular arch...
Warning: multiple UPHENO IDs found for group MP:0003678 (absent ear lobes), HP:0000387 (Absent earlobe), UPHENO:0027604 (absent pinna in the lobule of pinna), UPHENO:0026224 (absent lobule of pinna in the ear):...
One potential rule - If the second mapping comes from label to synonym or synonym to synonym then skip that mapping I think this would fix a number of the...
Warning: multiple UPHENO IDs found for group HP:0006342 (Peg-shaped maxillary lateral incisors), UPHENO:0041133 (conical calcareous tooth), MP:0030499 (conical tooth), UPHENO:0041270 (conical dentition), HP:0000698 (Conical tooth): ------------------------- Phenotypes: HP:0006342 (Peg-shaped maxillary...
@cmungall If you do want to merge the files I would create at least 2 one for those with explicit match types and one for those with confidence scores. Anyone...
The MP term [blood vessel congestion](https://www.ebi.ac.uk/ols4/ontologies/upheno/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMP_0000255) MP:0000255 is a parent to terms like artery occlusion (MP:0006134) and venoocclusion (MP:0006137) which are defined as blockage. I'm not sure that fluid-filled (PATO:0002409)...