Sebastián Ayala Ruano

GraphML: treat unknown data types as strings

12

Hello everyone, I have an error reading graphml files. The error message is presented below: Error in read.graph.graphml(file, ...) : At foreign-graphml.c:599 : Cannot parse GraphML file, unknown attribute type,...

Number of molecular descriptors obtained with PaDEL differs from the number of molecules in the molecule.smi file

7

Hello professor, I’m doing EDA and calculation of molecular descriptors of the betalactamase dataset. I replaced duplicated values by the mean of them as you suggested, and filtered only molecules...

Looking for guidance on MANs Inference with samples from different metagenomics/metatranscriptomics studies

4

Hello, I'm Sebastian, working on my MSc thesis, aiming to create a knowledge graph of the wastewater treatment microbiome. We're using Netcomi for constructing Microbial Association Networks (MANs) from MGnify...

Hi! I'm wondering if you would be interested in adding a [CITATION.cff file](https://docs.github.com/en/repositories/managing-your-repositorys-settings-and-features/customizing-your-repository/about-citation-files) to ease the citation of the software from the GitHub repository. I can help to create the...

Is it possible/recommended to get the microbial traits at the Genus level?

2

Hello! I'm working on a project to create a knowledge graph of the wastewater treatment microbiome. We have inferred the association between the microbes from abundance tables and created the...