Analyze multi-ome object with multiple conditions

[sky5198]

I have reviewed the tutorial to integrate scRNA-seq and scATAC-seq data (https://satijalab.org/seurat/articles/seurat5_atacseq_integration_vignette). If I have multiple conditions, do I integrate all of the scRNA-seq objects first and then the scATAC-seq? Or do I integrate the scRNA-seq and scATAC-seq for each condition and then perform an integrate at the very end merging all of the conditions?

I read that there was not a way to merge multi-ome objects yet but that post was made several years ago (https://github.com/satijalab/seurat/issues/5108), so I was not sure if anything had changed. I could not find a tutorial to do this.

Thank you in advanced!