seurat
seurat copied to clipboard
cannot find dispersion value in HVFInfo(seu)
Sorry this is a very naive question but I couldn't seem to find the answer. I was analysing a spatial seq dataset whose pca explains very limited variance. So I decided to look back at genes. I got a standard variance (y-axis) vs average expression (x-axis) plot via VariableFeaturePlot(seu)
and I was able to obtain the mean, variance and variance.standardized of each gene via HVFInfo(seu)
. Then I was trying to reference back to a previous scRNA-seq dataset I analyzed, of which when I do VariableFeaturePlot(seu)
I got a dispersion (y-axis) vs average expression (x-axis) plot. This time the HVFInfo(seu)
returned my a dataframe with mean, dispersion, dispersion.scaled of each gene. The only difference I could think of is that I was using Seurat V4 when analyzing the previous dataset, and now i'm using seurat V5.
Is there a way for me to get the dispersion values and plot in seurat V5? I couldn't seem to find it when searching with all the keywords I could think of.
Thank you!