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Published 20 hours ago • verified publisher icon satijalab

Subclustering

Open eneseroglu1 opened this issue 2 years ago • 1 comments

How can i subclustering for one cell type? I used to this code but i could not take any output in R. FindSubCluster( object, cluster, graph.name, subcluster.name = "sub.cluster", resolution = 0.5, algorithm = 1 ) I think, the problem is about graph name. I could not take any name the umap graph. İs there any solution about this situation?

eneseroglu1 avatar May 24 '22 11:05 eneseroglu1

Please include the full code you're running and the error message that you see

timoast avatar May 27 '22 16:05 timoast

Hi, you should provide a graph name in your object. E.g.: "RNA_snn" from obj.merge@graphs$RNA_snn.

torkencz avatar Sep 23 '22 19:09 torkencz