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Error installing SeuratData: "subscript out of bounds"

Open Brunox13 opened this issue 4 years ago • 7 comments

Hello, I am trying to install SeuratData using the following command:

devtools::install_github('satijalab/seurat-data')

However, this is what I get:

> devtools::install_github('satijalab/seurat-data')
Downloading GitHub repo satijalab/seurat-data@master
✓  checking for file ‘/private/var/folders/96/0v29cqvx1wx72btlpys3yszm0000gn/T/RtmpnMXfNB/remotes43d09078fd6/satijalab-seurat-data-12c77a8/DESCRIPTION’ ...
─  preparing ‘SeuratData’:
✓  checking DESCRIPTION meta-information ...
─  checking for LF line-endings in source and make files and shell scripts
─  checking for empty or unneeded directories
─  building ‘SeuratData_0.2.1.tar.gz’
   
* installing *source* package ‘SeuratData’ ...
** using staged installation
** R
** exec
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘SeuratData’:
 .onAttach failed in attachNamespace() for 'SeuratData', details:
  call: x[[2]]
  error: subscript out of bounds
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/SeuratData’
Error: Failed to install 'SeuratData' from GitHub:
  (converted from warning) installation of package ‘/var/folders/96/0v29cqvx1wx72btlpys3yszm0000gn/T//RtmpnMXfNB/file43d04f742f3b/SeuratData_0.2.1.tar.gz’ had non-zero exit status

Thanks for your help!

Brunox13 avatar Mar 04 '20 16:03 Brunox13

yes, I also meet the same problem.Have you solved it ?

Counts-Xin avatar Mar 05 '20 09:03 Counts-Xin

me too, hope to find a solution

YinCY123 avatar Mar 05 '20 23:03 YinCY123

devtools::install_github('satijalab/seurat-data')

produces the same error on both Catalina and Ubuntu 19.10

technocrat avatar Mar 06 '20 03:03 technocrat

I meet the same problem

tianf8 avatar Mar 06 '20 13:03 tianf8

devtools::install_github('satijalab/seurat-data') why can't be installed on mac?

ClaireZQ avatar Jul 11 '20 07:07 ClaireZQ

I just (2020-07-11 00:51 PDT) installed without problem on

R version 4.0.0 (2020-04-24)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Catalina 10.15.5

technocrat avatar Jul 11 '20 07:07 technocrat

I got the same problem:

devtools::install_github("satijalab/seurat-data") Error: Failed to install 'unknown package' from GitHub: error:1400410B:SSL routines:CONNECT_CR_SRVR_HELLO:wrong version number

chiolotus avatar Jul 17 '20 08:07 chiolotus