Error in if (sum(outliers) > 0) { : missing value where TRUE/FALSE needed

[bluejek128]

Hello

I get this error message when I run the function as below with my own dataset:

SCTransform(pbmc, vars.to.regress = "percent.mt", verbose = FALSE)

Could you please clarify why this error is indicated?

Thanks so much

[gokceneraslan]

I also get this error sometimes, no clue.

[ChristophH]

I don't know what is causing this. Could you share (a subset of) the data and the exact commands that trigger that error?

[gokceneraslan]

I can reproduce this only with the full dataset which is already very big, I'll try to reproduce it with a subset and let you know. Thanks.