sctransform batch_var doesn't work with vst.flavor = 'v2'

batch_var doesn't work with vst.flavor = 'v2'

Open cnk113 opened this issue 2 years ago • 2 comments

Hello,

When I set vst.flavor = 'v2' and batch_var between two different batches I get: Error in fit$Beta[, "Intercept"] : subscript out of bounds

Thanks, Chang

Feb 10 '22 18:02 cnk113

The current implementation of vst.flavor does not support batch_var and will be added in a future release.

Feb 14 '22 14:02 saketkc