azimuth icon indicating copy to clipboard operation
azimuth copied to clipboard

Published 20 hours ago • verified publisher icon satijalab

homolog.table as reference in RunAzimuth

Open KalinNonchev opened this issue 3 months ago • 2 comments

Hello,

RunAzimuth currently uses a hardcoded reference of the homolog.table in ConvertGeneNames which relies on an internet link and assumes an internet connection is available. https://github.com/satijalab/azimuth/blob/243ee5db80fcbffa3452c944254a325a3da2ef9e/R/azimuth.R#L103

Allowing to specify the location of the homolog.table in RunAzimuth would allow an offline execution of the function and improve flexibility.

Please let me know your opinion. Thank you in advance!

Best,

KalinNonchev avatar Apr 04 '24 05:04 KalinNonchev