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Markers listed in Azimuth for human tonsil are incorrect and in conflict with original preprint?

Open denvercal1234GitHub opened this issue 1 year ago • 0 comments

Hi there,

Thanks for the tool.

The markers listed for the celltype.l2 at https://azimuth.hubmapconsortium.org/references/#Human%20-%20Tonsil for the human tonsil reference dataset are not correct and are entirely different from what detailed in the preprint or through the author's HCATonsilData tool developed by @massonix

EX: For CM CD8 T cells:

  • From HCATonsilData tool: IL7R,ANXA1,S100A4,CCR7,CD28
  • From Azimuth app/website: CD2, CD8A, CD8B, GPR171, IL7R, ITGA1, GZMK, GZMA, SAMD3, GIMAP7

Would you mind clarifying whether the list is just not updated but the annotation is still using the correct markers?

Thank you.

denvercal1234GitHub avatar Jan 04 '24 13:01 denvercal1234GitHub