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XBB/XDP recombinant(45 seqs, 2 countries)

Open xz-keg opened this issue 1 year ago • 3 comments

There seems to be a side branch of XDP, either formed by recomb of any XBB* and XDP, or via FL.15/JN.1/FL.15 sandwich recomb.

XDP+A405G,T774C(rev)

Orf1a: K47R, I170T(rev)

XBB*--XDP (likely) Breakpoint between 775 and 896

Or

FL.15--JN.1.4--FL.15 Breakpoint 1 between 775 and 896 Breakpoint 2 between 26834 and 27809

GISAID query: T3565C, C28846T, G27915T, A405G No. of seqs: 4(USA) First: EPI_ISL_18621270, 2023-11-27 Latest: EPI_ISL_18752886, 2024

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xz-keg avatar Jan 13 '24 03:01 xz-keg