saras224

output files explanation

8

Hi @biofuture I have successfully got the results but I want to know if somewhere you have provided the explanation for the output files generated. I specifically want to know...

fastq.gz files

12

Hi @biofuture - I installed the singularity 3.8 version on ubuntu now I dont understand how to install args-oap application, I would appreciate if you could guide me in doing...

--paired end reads input not taking

3

Hi!! @BenLangmead @bgruening @Phhere I am getting this error: **kraken2: --paired requires positive and even number filenames** when I am providing this command to the system: kraken2 --use-names --db /home/rakesh/minikraken_8GB_20200312/...

Difference between fastani_ani and closest_placement_ani

1

Hi @donovan-h-parks I have gtdbtk.bac120.summary.tsv file for the MAGs, the file has two columns for ani; one is fastani_ani and the other is closest_placement_ani. Why are there two columns for...

ANI values for the MAGs

2

Hi @pchaumeil I have a confusion regarding the ANI values that the GTDB-tk gives for the classification of the MAGs. 1. which one should I consider the ANI values of...