sequencescape

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[ruby] Update delayed_job_active_record 4.1.8 → 4.1.10 (patch)

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Here is everything you need to know about this update. Please take a good look at what changed and the test results before merging this pull request. ### What changed?...

depfu[bot]

**User story** As a user, when filling in a sample manifest, I would like there to be some validation of any column with a well location input. There is currently...

harrietc52

**User story** As developers, we need to update Yard documentation hosted at https://sanger.github.io/sequencescape/ to include proper overview sections for resources in [`Api::V2`](https://sanger.github.io/sequencescape/Api/V2.html) **Who are the primary contacts for this story**...

dasunpubudumal

# Summary A decent number of our JSONAPI::Resources use `default_includes` for things like `:uuid_object` and this probably worked 7 years ago when it was added, but this is no longer...

sdjmchattie

Y24-196 [Sequencescape] EMSeq Option C

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Closes # #### Changes proposed in this pull request - Sequencescape part of option C in Story [Y24-196 - LCM WGS/EM-Seq - Research - Test pipeline configuration](https://github.com/sanger/sequencescape/issues/4200) 1 submission at...

yoldas

Closes # #### Changes proposed in this pull request 1 submission at start for EM library prep, then automatically create 1 new submission for the WGS library prep path at...

yoldas

**Describe the bug** When uploading the same manifest twice, and the second upload occurs before the first one has finished, duplicate records for samples and aliquots are created. A breakdown...

BenTopping

This is a sub-story to support Limber during Chromium pipelines with Sequencescape API V2 endpoints. These pipelines are defined in the integration suite. ## References Parent: https://github.com/sanger/limber/issues/1772 Sibling: https://github.com/sanger/limber/issues/1803

sdjmchattie

Y24-220 - Create API V2 end point for tag sets

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**User story** As PSD, we would like to design an API V2 endpoint to query tag sets. A tag set can be single index or dual index. A single index...

yoldas

Y24-226 - Test Sequencescape and Limber setup

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**Describe the Housekeeping** Test the local setup of the Sequencescape and Limber development environments from scratch, and document any quirks in the readmes. The Limber readme was improved recently -...

KatyTaylor