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DPL-418 Refine read-length tracking

Open JamesGlover opened this issue 2 years ago • 0 comments

User story As a sequencing tech I would like refined read length tracking to remove the need for providing additional information in comments.

See: https://github.com/sanger/sequencescape/issues/3628 when writing migrations, if its not done already

Who are the primary contacts for this story Tris Siobhan Rich R

Acceptance criteria To be considered successful the solution must allow:

  • [ ] Bulk submission templates should have options read_2_length column, similar for web interface
  • [ ] If reverse_length is not filled in, populate it with the read_length value.
  • [ ] Persist as request_metadata
  • [ ] Sequencing inboxes should replace single read_length value with: forward_read;index_read1;index_read2;reverse_read reverse_read fallsback to read1 if value is null to support historic data
  • [ ] index_read1 based on maximum tag1 length
  • [ ] index_read2 based on maximum tag2 length (0 if no tag2)
  • [ ] Inbox should contain clear description of this format
  • [ ] Remove unwanted columns Submission, Product Line, Previous Requests, Submitted at - Previous requests and submitted at in particular have a decent chunk of supporting code that might be able to be removed. (Also in https://github.com/sanger/sequencescape/issues/3628 so may be done)
  • [ ] Remove Dual-index column, as now redundant.
  • [ ] Reverse read-length column in flowcell message should be populated by reverse_read

Dependencies This story is blocked by the following dependencies:

  • #<issue_no.>
  • sanger/#<issue_no.>

References This story has a non-blocking relationship with:

  • #<issue_no.>
  • sanger/#<issue_no.>

Additional context Add any other context or screenshots about the feature request here.

JamesGlover avatar Jun 22 '22 08:06 JamesGlover