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Add BUSCO to the annotation_statistics subworkflow

Open BethYates opened this issue 1 year ago • 1 comments

BethYates avatar Sep 17 '24 15:09 BethYates

Add BUSCO to the annotations statistics subworkflow. To do this you can use the existing nf-core busco module https://nf-co.re/modules/busco/ and run BUSCO in proteins mode. You will need to pass it protein fasta files. Currently the sub-workflow only has a GFF file of the protein annotations, we can use this to produce the fasta files by using https://nf-co.re/modules/gffread/ and the genomic fasta file.

The BUSCO score should be added to the final file output by the subworkflow.

BethYates avatar Sep 17 '24 15:09 BethYates

Closed by #142

muffato avatar Nov 19 '24 09:11 muffato