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Parameters to Reproduce Figure 8 in ICML paper

Open Chibuikem709 opened this issue 2 years ago • 0 comments

Hello! I am working on a project comparing different clustering methods for single-cell, and I am using the Zeisel et al. 2015 data set. The results presented in Figure 8 look really good, and I am looking to reproduce the BISCUIT results found in Figure 8 Panel 2. Unfortunately, I can't seem to get the results using 3005 cells, 558 genes, and an alpha = 0.005. What were the parameters used to get this? When I put 558 genes in the parameters, does it select the same 558 genes as the ones used to generate Figure 8's results? Thanks for such a well-documented repo, too! It was so easy to get up and running!

Chibuikem709 avatar Oct 06 '22 14:10 Chibuikem709