New Tutorials

[robertaboukhalil]

Tools without tutorials yet:

• kraken2 (WIP)
• freebayes
• mummer
• kalign
• fasttree

Tools not in Dockerfile:

• vcflib (apt-get install -y libvcflib-tools)
• bioawk (apt-get install -y bioawk)
• lumpy (apt-get install -y lumpy-sv)
• muscle (apt-get install -y muscle)
• canu (apt-get install -y canu)
• hisat2 (apt-get install -y hisat2)
• nanopolish (apt-get install -y nanopolish)
• cutadapt (apt-get install -y cutadapt)
• sniffles (apt-get install -y sniffles) — 124 .bin files
• ViralWasm (apt-get install -y python3-biopython && curl -L -O "https://raw.githubusercontent.com/niemasd/ViralMSA/1.1.32/ViralMSA.py" && chmod a+x ViralMSA.py && install ViralMSA.py ${INSTALL_DIR}) — 133 .bin files (using Nuitka: 4 files, ~12MB, ~10s to run each time)
• lsd2 (git clone --branch v.2.4.1 https://github.com/tothuhien/lsd2.git && cd lsd2/src && make && install lsd2 ${INSTALL_DIR})
• tn93 (`git clone --branch v.1.0.11 https://github.com/veg/tn93.git && cd tn93 && cmake . && make install)
• ivar (apt-get install -y ivar)