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Code to reproduce experiments in "Accelerating Bayesian Optimization for Protein Design with Denoising Autoencoders" (Stanton et al 2022)
Hello, I'm having trouble replicating the _exact_ environment and results that's described in the `readme.md` and `requirements.txt`. Namely, running the commands one-by-one lands in an error at the `pip install...
I'm currently working on biological sequence design experiments based on the LAMBO paper and considering LAMBO as one of the main baselines. I appreciate the authors for providing well-reproducible experiments....
Please refer to Issue #14
Hi, `lambo` authors. First of all, thanks for making your code open source. Really interesting work! I'm currently working on replicating your RFP experiment, and I think I've found a...
I have run the current version of the code with the below command: ``` python scripts/black_box_opt.py optimizer=lambo optimizer.encoder_obj=mlm task=proxy_rfp tokenizer=protein surrogate=multi_task_exact_gp acquisition=nehvi ``` and there is the full stack trace...