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When converting from Seurat RDS to anndata h5ad, gene names are lost.

Open joshuak94 opened this issue 6 months ago • 8 comments

When I convert a Seurat RDS object to h5ad and load the file into a python environment, I see that object.var_names is just a list of numbers 1...#_of_genes. Even though in the R environment, if I check object[["RNA"]]$counts there are gene names. Is there a way to retain this information?

Thanks!

joshuak94 avatar Aug 07 '24 15:08 joshuak94