Samuel Marsh

Clustered Dotplot

9

- [x] fix percent mat subset when NAs present - [x] Fix expression color selection default - [ ] Domino plot annotation - [x] Add vignette and rebuild

- [ ] Custom/Enhanced Seurat Heatmap - [ ] Easy Aesthetic Volcano Plots - [ ] Cell Bender. Easy add to existing object.

Added features for `Percent_Expressing`

2

- [ ] Support for setting individual expression thresholds for each feature supplied - [ ] Support for quantifying cells expressing two or more features simultaneously

Hi, I'm trying to write custom function and having issue where pbmclapply fails to return a list where identical functions with lapply, pbapply, and mclapply function with no issues. In...

Release Prep v2.2.0

3

**To Do:** - [x] anndata warnings (https://github.com/samuel-marsh/scCustomize/issues/162) - [x] LIGER 2.0 compatibility or warning messages (https://github.com/samuel-marsh/scCustomize/issues/161) - [x] Spatial Plots (if time) (https://github.com/samuel-marsh/scCustomize/issues/160) - [x] ~ggprism workaround if not fixed...

Create a new violin plot function that allows for plotting of vertical violins with identities stacked on the y axis and features on the x axis. Colored by continuous gradient...

State Abundance Plotting

1

Plan coming soon.

Hi Seurat Team, Before attempting PR on this (which would be slightly more complicated than what I've done before) I wanted to just inquire about whether this is something that...

Hi Seurat Team, This PR is definitely something optional and totally fine if rejected. Recently, I have been updating scCustomize to work with new version of liger which has substantial...

Hi, Just quick PR to add support for additional newer viridis palettes. Best, Sam