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Published 20 hours ago • verified publisher icon samtools

bcftools merge - preserve sample specific FILTER value in INFO

Open blajoie opened this issue 6 years ago • 4 comments

While merging VCFs, I find it convenient to preserve the sample-specific FILTER value for each sample. This seems to be lost by default. Is this the intention?

Is there a way to preserve the filter value in the INFO fields via bcftools? (FT?)

blajoie avatar Nov 14 '18 17:11 blajoie