on imputing gender

Open toyanji opened this issue 3 years ago • 4 comments

I tried imputing gender of samples with guessploidy. In fact I have the gender status of some samples and others I don't have. I used guessploidy on the vcf file and it predicted all the samples to be females, which was not the case. How to correctly predict the gender from vcf? The output is given below. Would you please help me with this query

[W::hts_idx_load2] The index file is older than the data file: /gv0/home/jibin/LAB_DATA_FUll/ALL_DATA/ALLdata.vcf.gz.tbi
WARNING: bcftools version mismatch .. bcftools at 1.12, the plugin "guess-ploidy" at 1.6
[W::hts_idx_load3] The index file is older than the data file: /gv0/home/jibin/LAB_DATA_FUll/ALL_DATA/ALLdata.vcf.gz.tbi
# This file was produced by: bcftools +guess-ploidy(1.12+htslib-1.12)
# The command line was:	bcftools +guess-ploidy -v -t GT /gv0/home/jibin/LAB_DATA_FUll/ALL_DATA/ALLdata.vcf.gz
# [1]SEX	[2]Sample	[3]Predicted sex	[4]log P(Haploid)/nSites	[5]log P(Diploid)/nSites	[6]nSites	[7]Score: F < 0 < M ($4-$5)
SEX	YO01	F	-0.444065	-0.174180	9971852	-0.269884
SEX	YO02	F	-0.449840	-0.170134	9855509	-0.279706
SEX	YO03	F	-0.447348	-0.170803	10162589	-0.276545
SEX	YO04	F	-0.435872	-0.171553	10469852	-0.264319
SEX	YO05	F	-0.450184	-0.171956	10505968	-0.278228
SEX	YO06	F	-0.445089	-0.169413	10533157	-0.275676
SEX	YO07	F	-0.453373	-0.170837	10329588	-0.282537
SEX	YO08	F	-0.485545	-0.186473	11079028	-0.299071
SEX	YO09	F	-0.447061	-0.174912	9729881	-0.272150
SEX	YO10	F	-0.444611	-0.173625	9833659	-0.270987
SEX	YO100	F	-0.466071	-0.176395	10953327	-0.289676
SEX	YO101	F	-0.443683	-0.167452	10082250	-0.276232
SEX	YO102	F	-0.455601	-0.176558	11085863	-0.279042
SEX	YO103	F	-0.448107	-0.172810	10833224	-0.275297
SEX	YO104	F	-0.452862	-0.177779	10753091	-0.275082
SEX	YO106	F	-0.451036	-0.181476	10790478	-0.269560
SEX	YO107	F	-0.438907	-0.168234	9713933	-0.270673
SEX	YO108	F	-0.446081	-0.174207	10790240	-0.271875
SEX	YO109	F	-0.430592	-0.172716	9726660	-0.257876
SEX	YO11	F	-0.449549	-0.178114	10825149	-0.271435
SEX	YO110	F	-0.467877	-0.177823	11238496	-0.290054
SEX	YO111	F	-0.473882	-0.183030	11835292	-0.290852
SEX	YO112	F	-0.452466	-0.176463	10093390	-0.276003
SEX	YO113	F	-0.457318	-0.178724	9236038	-0.278595
SEX	YO114	F	-0.458584	-0.180918	9618520	-0.277666
SEX	YO115	F	-0.459789	-0.180531	9374593	-0.279258
SEX	YO116	F	-0.444626	-0.169836	10033507	-0.274789
SEX	YO117	F	-0.460737	-0.178510	10707924	-0.282227
SEX	YO118	F	-0.464425	-0.177401	10756816	-0.287025
SEX	YO119	F	-0.477311	-0.180277	10605128	-0.297033
SEX	YO12	F	-0.445340	-0.173113	10385209	-0.272227
SEX	YO120	F	-0.448891	-0.170880	10088815	-0.278011
SEX	YO121	F	-0.444724	-0.168943	9237352	-0.275781
SEX	YO122	F	-0.440726	-0.174632	8629263	-0.266094
SEX	YO123	F	-0.476170	-0.182344	10432239	-0.293826
SEX	YO124	F	-0.445036	-0.171965	9419021	-0.273070
SEX	YO125	F	-0.443550	-0.169950	9309678	-0.273600
SEX	YO126	F	-0.450583	-0.170303	9630512	-0.280280
SEX	YO127	F	-0.455824	-0.172806	9775562	-0.283018
SEX	YO128	F	-0.435184	-0.170873	10258891	-0.264311
SEX	YO129	F	-0.449966	-0.175100	9865483	-0.274866
SEX	YO13	F	-0.463831	-0.177226	11307523	-0.286605
SEX	YO130	F	-0.445035	-0.173157	8460984	-0.271877
SEX	YO131	F	-0.463009	-0.177119	10595437	-0.285890
SEX	YO132	F	-0.438219	-0.170390	9533866	-0.267829
SEX	YO133	F	-0.447086	-0.171821	9760155	-0.275265
SEX	YO134	F	-0.453291	-0.170911	9798482	-0.282380
SEX	YO135	F	-0.454546	-0.174315	10106352	-0.280231
SEX	YO136	F	-0.504098	-0.171953	9665771	-0.332145
SEX	YO137	F	-0.442705	-0.170041	9775817	-0.272664
SEX	YO138	F	-0.465865	-0.183075	9361668	-0.282790
SEX	YO139	F	-0.441867	-0.170444	9209728	-0.271423
SEX	YO14	F	-0.452552	-0.175498	10562997	-0.277054
SEX	YO140	F	-0.448625	-0.173080	9914238	-0.275544
SEX	YO141	F	-0.445050	-0.169322	9955690	-0.275728
SEX	YO142	F	-0.459636	-0.175544	10131750	-0.284093
SEX	YO143	F	-0.458550	-0.175562	9962208	-0.282988
SEX	YO145	F	-0.443801	-0.170667	9420784	-0.273134
SEX	YO146	F	-0.443011	-0.168516	9389419	-0.274495
SEX	YO147	F	-0.441938	-0.168960	10115903	-0.272978
SEX	YO148	F	-0.447121	-0.169938	10234245	-0.277183
SEX	YO149	F	-0.443011	-0.166997	9739645	-0.276014
SEX	YO15	F	-0.470289	-0.181812	10848824	-0.288477
SEX	YO150	F	-0.432337	-0.163542	9820808	-0.268795
SEX	YO151	F	-0.442623	-0.167745	9854129	-0.274878
SEX	YO152	F	-0.458432	-0.173813	5762661	-0.284619
SEX	YO153	F	-0.477536	-0.178888	5954171	-0.298648
SEX	YO154	F	-0.487130	-0.182313	6158440	-0.304817
SEX	YO155	F	-0.478736	-0.183312	6085211	-0.295424
SEX	YO156	F	-0.465373	-0.177062	6376995	-0.288311
SEX	YO157	F	-0.457785	-0.172643	10548161	-0.285142
SEX	YO158	F	-0.464406	-0.175775	6270892	-0.288631
SEX	YO159	F	-0.456449	-0.173506	6549293	-0.282943
SEX	YO16	F	-0.497716	-0.191703	11289240	-0.306013
SEX	YO160	F	-0.475138	-0.179640	6338154	-0.295498
SEX	YO161	F	-0.462651	-0.177243	6410176	-0.285407
SEX	YO162	F	-0.440119	-0.170787	6548842	-0.269333
SEX	YO163	F	-0.447898	-0.170219	5982953	-0.277679
SEX	YO164	F	-0.462287	-0.175280	6803229	-0.287008
SEX	YO165	F	-0.455044	-0.173383	6467788	-0.281660
SEX	YO166	F	-0.478776	-0.180610	6255185	-0.298165
SEX	YO167	F	-0.470342	-0.179648	7051627	-0.290693
SEX	YO168	F	-0.467620	-0.178583	6198350	-0.289036
SEX	YO169	F	-0.460277	-0.174560	5982196	-0.285717
SEX	YO17	F	-0.440597	-0.174352	10243758	-0.266245
SEX	YO171	F	-0.464932	-0.176512	6423276	-0.288420
SEX	YO172	F	-0.457427	-0.176013	6243471	-0.281414
SEX	YO173	F	-0.456287	-0.175672	6384795	-0.280615
SEX	YO175	F	-0.474907	-0.182194	6259805	-0.292713
SEX	YO176	F	-0.478386	-0.179004	6021195	-0.299382
SEX	YO177	F	-0.470017	-0.177739	5759873	-0.292278
SEX	YO178	F	-0.466729	-0.176431	5737878	-0.290298
SEX	YO179	F	-0.462926	-0.174093	6086877	-0.288834
SEX	YO18	F	-0.435057	-0.174110	10843480	-0.260948
SEX	YO180	F	-0.464135	-0.181426	6027835	-0.282709
SEX	YO181	F	-0.470183	-0.182186	6322690	-0.287997
SEX	YO183	F	-0.464737	-0.180782	5884517	-0.283955
SEX	YO184	F	-0.464809	-0.175499	6314972	-0.289310
SEX	YO185	F	-0.455755	-0.173620	6123688	-0.282134
SEX	YO186	F	-0.466734	-0.175263	6021059	-0.291471
SEX	YO187	F	-0.455720	-0.174073	5431445	-0.281647
SEX	YO189	F	-0.471403	-0.181125	5846838	-0.290278
SEX	YO19	F	-0.450838	-0.172464	11152118	-0.278373
SEX	YO190	F	-0.466249	-0.176851	5868810	-0.289399
SEX	YO191	F	-0.469463	-0.177417	7043576	-0.292046
SEX	YO192	F	-0.471693	-0.179739	5581230	-0.291954
SEX	YO193	F	-0.458589	-0.177144	6671671	-0.281446
SEX	YO194	F	-0.470462	-0.178219	5832886	-0.292243
SEX	YO195	F	-0.480391	-0.180313	5855546	-0.300078
SEX	YO196	F	-0.471032	-0.177141	6349134	-0.293892
SEX	YO197	F	-0.477542	-0.179803	6706156	-0.297739
SEX	YO198	F	-0.476837	-0.179736	5721589	-0.297101
SEX	YO199	F	-0.473133	-0.177225	6338603	-0.295908
SEX	YO20	F	-0.446257	-0.170718	9962047	-0.275540
SEX	YO200	F	-0.469875	-0.176019	6132086	-0.293856
SEX	YO201	F	-0.469796	-0.176537	5955294	-0.293259
SEX	YO202	F	-0.480297	-0.182131	5748950	-0.298166
SEX	YO203	F	-0.478281	-0.180207	5434172	-0.298074
SEX	YO204	F	-0.431411	-0.167922	7500647	-0.263489
SEX	YO205	F	-0.445059	-0.169309	9036624	-0.275750
SEX	YO206	F	-0.447644	-0.170472	9425071	-0.277171
SEX	YO207	F	-0.442543	-0.169761	8942498	-0.272781
SEX	YO208	F	-0.454483	-0.175954	9306172	-0.278528
SEX	YO209	F	-0.441902	-0.168531	8371853	-0.273371
SEX	YO21	F	-0.462352	-0.176438	11589205	-0.285914
SEX	YO211	F	-0.436337	-0.166489	9399682	-0.269848
SEX	YO213	F	-0.452668	-0.172703	8960408	-0.279965
SEX	YO214	F	-0.443372	-0.169321	8809076	-0.274051
SEX	YO215	F	-0.464711	-0.185761	7894511	-0.278950
SEX	YO216	F	-0.472773	-0.186565	8333714	-0.286208
SEX	YO217	F	-0.466818	-0.182252	9340809	-0.284566
SEX	YO218	F	-0.473423	-0.186209	8787238	-0.287213
SEX	YO219	F	-0.455229	-0.174701	10388344	-0.280528
SEX	YO22	F	-0.431471	-0.168095	10133992	-0.263376
SEX	YO220	F	-0.489261	-0.190912	8473483	-0.298349
SEX	YO221	F	-0.487612	-0.202451	8329203	-0.285161
SEX	YO222	F	-0.458267	-0.175289	9008744	-0.282977
SEX	YO223	F	-0.457941	-0.184222	8408167	-0.273719
SEX	YO224	F	-0.445266	-0.168901	8638319	-0.276365
SEX	YO225	F	-0.457208	-0.177226	10822461	-0.279982
SEX	YO226	F	-0.463357	-0.182852	10150209	-0.280505
SEX	YO227	F	-0.435142	-0.166174	7436580	-0.268968
SEX	YO228	F	-0.440985	-0.172464	8744492	-0.268520
SEX	YO229	F	-0.450823	-0.178601	8302131	-0.272222
SEX	YO23	F	-0.441555	-0.169673	9773250	-0.271882
SEX	YO230	F	-0.446353	-0.170954	10085640	-0.275399
SEX	YO231	F	-0.447293	-0.170953	10320424	-0.276340
SEX	YO233	F	-0.449192	-0.171382	9857118	-0.277810
SEX	YO234	F	-0.479138	-0.192531	7765846	-0.286608
SEX	YO238	F	-0.494117	-0.192668	9616613	-0.301450
SEX	YO239	F	-0.470303	-0.187654	8725423	-0.282649
SEX	YO24	F	-0.434195	-0.170797	9643433	-0.263398
SEX	YO241	F	-0.456051	-0.175100	10334454	-0.280951
SEX	YO243	F	-0.533536	-0.222502	8870609	-0.311034
SEX	YO245	F	-0.470230	-0.182797	11322067	-0.287433
SEX	YO246	F	-0.467706	-0.178167	11746149	-0.289540
SEX	YO247	F	-0.477101	-0.188067	10952793	-0.289034
SEX	YO248	F	-0.476507	-0.187029	11355050	-0.289478
SEX	YO249	F	-0.469316	-0.183759	9868657	-0.285557
SEX	YO25	F	-0.435757	-0.169169	9362298	-0.266588
SEX	YO250	F	-0.482327	-0.184354	11346119	-0.297974
SEX	YO251	F	-0.443488	-0.170549	10653355	-0.272940
SEX	YO252	F	-0.471072	-0.186857	10812720	-0.284215
SEX	YO254	F	-0.459154	-0.179820	10077602	-0.279334
SEX	YO255	F	-0.449631	-0.171101	10730637	-0.278531
SEX	YO256	F	-0.449538	-0.172471	10455499	-0.277068
SEX	YO257	F	-0.457572	-0.176668	9562237	-0.280905
SEX	YO258	F	-0.451281	-0.172541	9716362	-0.278740
SEX	YO259	F	-0.461844	-0.180423	9826700	-0.281421
SEX	YO26	F	-0.427563	-0.169914	10215475	-0.257650
SEX	YO260	F	-0.442506	-0.168807	10616954	-0.273699
SEX	YO261	F	-0.448050	-0.167822	10248434	-0.280228
SEX	YO262	F	-0.455107	-0.174456	10365375	-0.280651
SEX	YO263	F	-0.460348	-0.177197	10597991	-0.283151
SEX	YO264	F	-0.453362	-0.173563	10552531	-0.279799
SEX	YO266	F	-0.438143	-0.164166	8939489	-0.273976
SEX	YO267	F	-0.425124	-0.163628	9514134	-0.261496
SEX	YO268	F	-0.496535	-0.200627	9407409	-0.295908
SEX	YO27	F	-0.448739	-0.171284	10240821	-0.277455
SEX	YO28	F	-0.443628	-0.168988	9276777	-0.274641
SEX	YO29	F	-0.454830	-0.172304	10436791	-0.282525
SEX	YO30	F	-0.448652	-0.170523	10471044	-0.278129
SEX	YO31	F	-0.445180	-0.169499	10157509	-0.275680
SEX	YO32	F	-0.460748	-0.176201	10619742	-0.284546
SEX	YO33	F	-0.447776	-0.171138	10062921	-0.276638
SEX	YO34	F	-0.447343	-0.170929	10031529	-0.276414
SEX	YO35	F	-0.449903	-0.171696	10280205	-0.278206
SEX	YO36	F	-0.452012	-0.171455	10355864	-0.280556
SEX	YO37	F	-0.441457	-0.167942	9792676	-0.273516
SEX	YO38	F	-0.450299	-0.170966	10219544	-0.279333
SEX	YO39	F	-0.452118	-0.171798	10336974	-0.280320
SEX	YO40	F	-0.481172	-0.189362	11201007	-0.291810
SEX	YO41	F	-0.455438	-0.182363	9597862	-0.273075
SEX	YO42	F	-0.443116	-0.174656	9752677	-0.268460
SEX	YO43	F	-0.479464	-0.187022	10577751	-0.292442
SEX	YO44	F	-0.462920	-0.182804	9732408	-0.280116
SEX	YO45	F	-0.454147	-0.179913	9487040	-0.274234
SEX	YO46	F	-0.446350	-0.176456	11828582	-0.269895
SEX	YO47	F	-0.464791	-0.187107	9095570	-0.277685
SEX	YO48	F	-0.490790	-0.201415	9881841	-0.289375
SEX	YO49	F	-0.496968	-0.202893	10455715	-0.294075
SEX	YO50	F	-0.437084	-0.167451	9624869	-0.269633
SEX	YO51	F	-0.432510	-0.163781	9090026	-0.268729
SEX	YO52	F	-0.430033	-0.162523	9384862	-0.267510
SEX	YO53	F	-0.437538	-0.164112	9533599	-0.273426
SEX	YO54	F	-0.429237	-0.162983	9569160	-0.266254
SEX	YO55	F	-0.444355	-0.169447	10313584	-0.274909
SEX	YO56	F	-0.469848	-0.172744	11340309	-0.297105
SEX	YO57	F	-0.455945	-0.173790	11451874	-0.282155
SEX	YO58	F	-0.444808	-0.170227	10895274	-0.274580
SEX	YO59	F	-0.450220	-0.174539	11339337	-0.275680
SEX	YO60	F	-0.429748	-0.162206	9116183	-0.267542
SEX	YO61	F	-0.458966	-0.173710	11833816	-0.285257
SEX	YO62	F	-0.451062	-0.171426	11400264	-0.279636
SEX	YO63	F	-0.450034	-0.170382	10921100	-0.279652
SEX	YO64	F	-0.458461	-0.173279	11481454	-0.285182
SEX	YO65	F	-0.453435	-0.173385	9912794	-0.280050
SEX	YO66	F	-0.466102	-0.183099	9028352	-0.283003
SEX	YO67	F	-0.456885	-0.177560	8376270	-0.279325
SEX	YO68	F	-0.454548	-0.175198	10600613	-0.279350
SEX	YO69	F	-0.428613	-0.165801	8733700	-0.262812
SEX	YO70	F	-0.445039	-0.168309	8978647	-0.276730
SEX	YO71	F	-0.455002	-0.175593	9267033	-0.279409
SEX	YO72	F	-0.442752	-0.166533	9419820	-0.276219
SEX	YO73	F	-0.436221	-0.165916	9147349	-0.270305
SEX	YO74	F	-0.464711	-0.179497	11236194	-0.285214
SEX	YO75	F	-0.547851	-0.242699	7965819	-0.305152
SEX	YO76	F	-0.430704	-0.165941	8815999	-0.264763
SEX	YO77	F	-0.443669	-0.169259	8904236	-0.274410
SEX	YO78	F	-0.448974	-0.172725	10799862	-0.276249
SEX	YO79	F	-0.431178	-0.165708	9604912	-0.265471
SEX	YO80	F	-0.443585	-0.168991	9417144	-0.274595
SEX	YO81	F	-0.443817	-0.169533	9752127	-0.274284
SEX	YO82	F	-0.441994	-0.167594	9318702	-0.274400
SEX	YO83	F	-0.444148	-0.169757	9215423	-0.274391
SEX	YO84	F	-0.440146	-0.167631	8745173	-0.272515
SEX	YO85	F	-0.452569	-0.165857	8935065	-0.286713
SEX	YO86	F	-0.438258	-0.165220	9147922	-0.273039
SEX	YO87	F	-0.450049	-0.169127	9863088	-0.280921
SEX	YO88	F	-0.447133	-0.172497	9579827	-0.274636
SEX	YO89	F	-0.445575	-0.170763	9547039	-0.274812
SEX	YO90	F	-0.451239	-0.172074	10959022	-0.279165
SEX	YO91	F	-0.439012	-0.170797	8754801	-0.268215
SEX	YO92	F	-0.443131	-0.167147	9224130	-0.275984
SEX	YO93	F	-0.433033	-0.165065	9048723	-0.267969
SEX	YO94	F	-0.483350	-0.185617	12764546	-0.297733
SEX	YO95	F	-0.441203	-0.168621	9400625	-0.272581
SEX	YO96	F	-0.439344	-0.175275	11037017	-0.264069
SEX	YO97	F	-0.558362	-0.209578	13014069	-0.348783
SEX	YO98	F	-0.434507	-0.166323	8862513	-0.268184
SEX	01	F	-0.125421	-0.053748	46934522	-0.071673
SEX	A1	F	-0.149730	-0.059695	56304509	-0.090035
SEX	B1	F	-0.153151	-0.062188	41907139	-0.090963
SEX	D1	F	-0.127714	-0.053753	46517909	-0.073961
SEX	E1	F	-0.127941	-0.053515	40581788	-0.074426
SEX	F4	F	-0.123541	-0.055963	42116615	-0.067578
SEX	H1	F	-0.127952	-0.057366	39185157	-0.070586
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SEX	N01-301	F	-0.150147	-0.063588	37078015	-0.086559
SEX	N01-303	F	-0.149003	-0.066228	34393788	-0.082776
SEX	N01-304	F	-0.149776	-0.064690	27877434	-0.085086
SEX	N01-305	F	-0.148942	-0.065754	33826686	-0.083188
SEX	N01-306	F	-0.143975	-0.060962	34532116	-0.083014
SEX	N01-308	F	-0.143975	-0.060962	34532116	-0.083014
SEX	N01-310	F	-0.137401	-0.057197	33386939	-0.080204
SEX	N01-311	F	-0.141792	-0.061707	37965967	-0.080085
SEX	N01-312	F	-0.144893	-0.061136	39198669	-0.083758
SEX	N01-313	F	-0.143607	-0.061124	37735343	-0.082482
SEX	N01-314	F	-0.153094	-0.062613	41615543	-0.090481
SEX	N01-315	F	-0.142577	-0.060057	35280493	-0.082520
SEX	N01-317	F	-0.165650	-0.072376	48090548	-0.093274
SEX	N01-318	F	-0.148466	-0.062809	43717717	-0.085658
SEX	N01-319	F	-0.158294	-0.067703	39891031	-0.090591
SEX	N01-321	F	-0.143543	-0.061081	44649650	-0.082462
SEX	N01-322	F	-0.147747	-0.062827	39874166	-0.084920
SEX	N01-324	F	-0.198839	-0.095554	47845822	-0.103286
SEX	N01-325	F	-0.153806	-0.065466	52881294	-0.088340
SEX	N01-326	F	-0.175225	-0.076988	59505013	-0.098236
SEX	N01-327	F	-0.151661	-0.064655	50225021	-0.087006
SEX	N01-328	F	-0.151177	-0.065524	48680811	-0.085653
SEX	N01-329	F	-0.150836	-0.063313	45620067	-0.087523
SEX	N01-330	F	-0.145188	-0.062075	46970191	-0.083113
SEX	N01-331	F	-0.145972	-0.062695	44267129	-0.083277
SEX	N01-332	F	-0.146127	-0.063626	44688301	-0.082500
SEX	N01-333	F	-0.145470	-0.061910	41233811	-0.083560
SEX	N01-334	F	-0.150542	-0.065635	47812849	-0.084907
SEX	N01-335	F	-0.142120	-0.060932	43172002	-0.081188
SEX	N01-337	F	-0.142566	-0.061397	48666753	-0.081168
SEX	N01-338	U	0.500000	0.500000	0	0.000000
SEX	N01-339	F	-0.141772	-0.059968	46048944	-0.081804
SEX	N01-340	F	-0.143110	-0.061264	44330698	-0.081845
SEX	N01-341	F	-0.147174	-0.063725	45412980	-0.083449
SEX	N01-342	F	-0.143711	-0.061923	49434225	-0.081788
SEX	N01-343	F	-0.145526	-0.062939	46685299	-0.082587
SEX	N01-344	F	-0.158846	-0.071045	51878445	-0.087801
SEX	N01-345	F	-0.148850	-0.064103	48823895	-0.084747
SEX	N01-346	F	-0.141737	-0.059958	48908760	-0.081778
SEX	N01-347	F	-0.140946	-0.060613	56165104	-0.080334
SEX	N01-348	F	-0.144749	-0.061649	52702755	-0.083100
SEX	N01-349	F	-0.139906	-0.059183	47323837	-0.080724
SEX	N01-350	F	-0.150667	-0.063214	37434172	-0.087454
SEX	N01-351	F	-0.146050	-0.062099	46550632	-0.083951
SEX	N01-352	F	-0.146572	-0.062775	56426696	-0.083798
SEX	N01-353	F	-0.142609	-0.062012	46435739	-0.080598
SEX	N01-354	F	-0.141918	-0.060509	59128044	-0.081408
SEX	N01-355	F	-0.147315	-0.063244	60865742	-0.084071
SEX	N01-356	F	-0.137059	-0.061476	24390274	-0.075583
SEX	N01-357	F	-0.127675	-0.054985	21307771	-0.072690
SEX	N01-358	F	-0.126456	-0.054833	25127106	-0.071623
SEX	N01-359	F	-0.135957	-0.057011	48783951	-0.078946
SEX	N01-360	F	-0.124356	-0.053902	23433135	-0.070454
SEX	N01-397	F	-0.123784	-0.053933	21789923	-0.069852
SEX	N01-398	F	-0.125016	-0.053948	25147776	-0.071068
SEX	N01-399	F	-0.126500	-0.054387	23592842	-0.072113
SEX	N01-400	F	-0.123459	-0.054357	27638251	-0.069102
SEX	N01-401	F	-0.127291	-0.054315	24469438	-0.072976
SEX	N01-402	F	-0.126890	-0.054472	23976746	-0.072418
SEX	N01-403	F	-0.128476	-0.055064	26981144	-0.073412
SEX	N01-404	F	-0.125285	-0.053862	24015682	-0.071423
SEX	N01-405	F	-0.127602	-0.055512	25723060	-0.072091
SEX	N01-409	F	-0.125346	-0.054993	25660530	-0.070354
SEX	N01-410	F	-0.128377	-0.055158	25785649	-0.073218
SEX	N01-413	F	-0.129771	-0.056154	27021938	-0.073617
SEX	N01-414	F	-0.125272	-0.053505	28280024	-0.071768
SEX	N01-415	F	-0.128162	-0.054594	28297254	-0.073568
SEX	N01-416	F	-0.125725	-0.054359	23640264	-0.071366
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SEX	N01-418	F	-0.124422	-0.052919	25939534	-0.071503
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SEX	N01-422	F	-0.128020	-0.054849	23266159	-0.073172
SEX	N01-423	F	-0.127848	-0.054036	24043104	-0.073812
SEX	N01-424	F	-0.126940	-0.054170	25526367	-0.072770
SEX	N01-425	F	-0.127799	-0.054176	23495200	-0.073623
SEX	N01-426	F	-0.126343	-0.054525	21714081	-0.071819
SEX	N01-427	F	-0.126793	-0.054397	27912741	-0.072396
SEX	N01-428	F	-0.130160	-0.055489	22842058	-0.074672
SEX	N01-429	F	-0.126778	-0.053926	23972802	-0.072852
SEX	N01-430	F	-0.131681	-0.056791	22433996	-0.074890
SEX	N01-431	F	-0.126473	-0.053058	24026839	-0.073415
SEX	N01-432	F	-0.127135	-0.054126	25490524	-0.073008
SEX	N01-433	F	-0.127184	-0.053251	23986489	-0.073934
SEX	N01-434	F	-0.128664	-0.054623	22975429	-0.074041
SEX	N01-435	F	-0.129937	-0.054770	25071525	-0.075167
SEX	N01-436	F	-0.134608	-0.056839	28598044	-0.077769
SEX	N01-437	F	-0.128378	-0.056229	22836873	-0.072149
SEX	N01-438	F	-0.127859	-0.054462	21695529	-0.073396
SEX	N01-439	F	-0.127065	-0.054742	22917562	-0.072323
SEX	N01-440	F	-0.127453	-0.054125	22432694	-0.073329
SEX	N01-441	F	-0.126224	-0.053688	24407026	-0.072536
SEX	N01-442	F	-0.129019	-0.054589	24897863	-0.074431
SEX	N01-443	F	-0.125012	-0.052343	25212712	-0.072669
SEX	N01-445-01	F	-0.125640	-0.053788	27806008	-0.071852
SEX	N01-445-02	F	-0.127978	-0.054826	24302413	-0.073152
SEX	N01-446-01	F	-0.129464	-0.055516	24775264	-0.073949
SEX	N01-446-02	F	-0.131788	-0.056963	34597664	-0.074825
SEX	N01-447	F	-0.130349	-0.055128	24742983	-0.075221
SEX	NBS1	F	-0.125074	-0.055295	55181695	-0.069779
SEX	S1	F	-0.126228	-0.056214	36555195	-0.070015
SEX	S3	F	-0.143513	-0.059152	56937514	-0.084361
SEX	X100-1	F	-0.131764	-0.056591	51568663	-0.075173
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SEX	X105-1	F	-0.153990	-0.070522	37564310	-0.083468
SEX	X106-1	F	-0.164952	-0.077593	41012994	-0.087359
SEX	X107-1	F	-0.180647	-0.086984	37971648	-0.093663
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SEX	X109-1	F	-0.174955	-0.084070	32451458	-0.090885
SEX	X110-1	F	-0.169780	-0.081064	41302480	-0.088717
SEX	X111-1	F	-0.185600	-0.090003	41117264	-0.095596
SEX	X112-1	F	-0.187821	-0.091863	44670130	-0.095958
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SEX	X115-1	F	-0.190274	-0.093697	39513860	-0.096576
SEX	X116-1	F	-0.189036	-0.092699	43997080	-0.096337
SEX	X117-1	F	-0.187706	-0.092154	36378740	-0.095553
SEX	X118-1	F	-0.194621	-0.095733	45217618	-0.098888
SEX	X119-1	F	-0.186837	-0.090645	51941071	-0.096191
SEX	X121-1	F	-0.183648	-0.088866	42831778	-0.094782
SEX	X122-1	F	-0.188011	-0.092224	43593987	-0.095787
SEX	X123-1	F	-0.196397	-0.097697	36725122	-0.098700
SEX	X124-1	F	-0.191964	-0.094038	44405101	-0.097926
SEX	X125-1	F	-0.198036	-0.098160	45027683	-0.099876
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SEX	X127-1	F	-0.195424	-0.098072	30848623	-0.097352
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SEX	X231-1	F	-0.162240	-0.075806	38654856	-0.086434
SEX	X232-1	F	-0.177541	-0.081165	47754835	-0.096376
SEX	X233-1	F	-0.168550	-0.079671	38418807	-0.088879
SEX	X234-1	F	-0.164751	-0.078219	29769907	-0.086532
SEX	X235-1	F	-0.164011	-0.076521	43538210	-0.087490
SEX	X236-1	F	-0.164517	-0.078143	37830090	-0.086374
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SEX	X239-1	F	-0.155079	-0.073066	31326960	-0.082013
SEX	X240-1	F	-0.158447	-0.067527	36729705	-0.090920
SEX	X241-1	F	-0.163100	-0.077076	31293712	-0.086024
SEX	X242-1	F	-0.128000	-0.054153	26906877	-0.073847
SEX	X243-1	F	-0.153562	-0.071288	31425995	-0.082274
SEX	X244-1	F	-0.129153	-0.054922	25069325	-0.074230
SEX	X245-1	F	-0.127680	-0.053766	27346277	-0.073914
SEX	X246-1	F	-0.158699	-0.073919	38589439	-0.084780
SEX	X247-1	F	-0.175171	-0.082771	37723476	-0.092400
SEX	X248-1	F	-0.155602	-0.072998	36308964	-0.082604
SEX	X249-1	F	-0.172380	-0.082787	40287353	-0.089593
SEX	X250-1	F	-0.152576	-0.072037	30308698	-0.080538
SEX	X251-1	F	-0.148692	-0.068347	25306638	-0.080345
SEX	X252-1	F	-0.153700	-0.071528	33742880	-0.082172
SEX	X253-1	F	-0.167004	-0.071750	44435036	-0.095255
SEX	X254-1	F	-0.161536	-0.076292	39093302	-0.085244
SEX	X255-1	F	-0.167564	-0.079223	44100218	-0.088341
SEX	X256-1	F	-0.129370	-0.054245	25777551	-0.075126
SEX	X257-1	F	-0.167923	-0.073196	33602139	-0.094727
SEX	X258-1	F	-0.131682	-0.056354	25730412	-0.075328
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SEX	X26-1	F	-0.117253	-0.050621	35069935	-0.066632
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SEX	X263-1	F	-0.159100	-0.074524	44209462	-0.084577
SEX	X264-1	F	-0.150796	-0.067942	41830501	-0.082854
SEX	X265-1	F	-0.130642	-0.055138	23977202	-0.075505
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SEX	X272-1	F	-0.161306	-0.074708	42939857	-0.086598
SEX	X273-1	F	-0.163501	-0.076026	39112518	-0.087475
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SEX	X340-1	F	-0.159652	-0.071365	69465287	-0.088287
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SEX	X347-1	F	-0.165040	-0.075197	69279280	-0.089843
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SEX	X349-1	F	-0.169633	-0.076390	72839843	-0.093244
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SEX	X368-1	F	-0.152341	-0.068378	58901103	-0.083963
SEX	X369-1	F	-0.171097	-0.079146	60093407	-0.091951
SEX	X370-1	F	-0.164088	-0.075560	57748492	-0.088529
SEX	X371-1	F	-0.151355	-0.067790	55533935	-0.083565
SEX	X373-1	F	-0.151975	-0.066722	63653278	-0.085252
SEX	X375-1	F	-0.155183	-0.069491	58731343	-0.085693
SEX	X376-1	F	-0.170025	-0.075197	70641077	-0.094827
SEX	X377-1	F	-0.148134	-0.063983	54034785	-0.084151
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SEX	X379-1	F	-0.169508	-0.080743	53975737	-0.088765
SEX	X380-1	F	-0.184272	-0.089460	50771542	-0.094812
SEX	X381-1	F	-0.138401	-0.058910	58346973	-0.079491
SEX	X382-1	F	-0.144313	-0.062828	59486516	-0.081485
SEX	X383-1	F	-0.161996	-0.073921	65672197	-0.088076
SEX	X384-1	F	-0.158877	-0.072332	58608492	-0.086544
SEX	X385-1	F	-0.174421	-0.082055	57914398	-0.092366
SEX	X386-1	F	-0.177060	-0.080214	50607403	-0.096846
SEX	X387-1	F	-0.163889	-0.074983	55744772	-0.088905
SEX	X388-1	F	-0.160882	-0.073927	57078956	-0.086955
SEX	X389-1	F	-0.172699	-0.079887	60867206	-0.092812
SEX	X390-1	F	-0.176146	-0.082236	57869913	-0.093909
SEX	X391-1	F	-0.156351	-0.069518	64572387	-0.086833
SEX	X392-1	F	-0.169939	-0.078274	60312983	-0.091665
SEX	X393-1	F	-0.172699	-0.080317	60164147	-0.092383
SEX	X394-1	F	-0.150997	-0.067450	55911070	-0.083547
SEX	X395-1	F	-0.165527	-0.076037	52660157	-0.089490
SEX	X396-1	F	-0.162002	-0.073634	52535623	-0.088368
SEX	X397-1	F	-0.157008	-0.070687	65300419	-0.086320
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SEX	X399-1	F	-0.178488	-0.084492	62309486	-0.093996
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SEX	X402-1	F	-0.145206	-0.065617	59642096	-0.079590
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SEX	X405-1	F	-0.161947	-0.074159	59319817	-0.087788
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SEX	X409-1	F	-0.155485	-0.069490	57644111	-0.085995
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SEX	X419-1	F	-0.154031	-0.071068	36824375	-0.082963
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SEX	X421-1	F	-0.158698	-0.069448	80534874	-0.089250
SEX	X424-1	F	-0.167982	-0.075710	73769174	-0.092272
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SEX	X426-1	F	-0.149269	-0.064977	68590465	-0.084292
SEX	X428-1	F	-0.150081	-0.066894	54206281	-0.083187
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SEX	X431-1	F	-0.164469	-0.074905	62351691	-0.089563
SEX	X433-1	F	-0.164392	-0.075063	60455456	-0.089329
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SEX	X439-1	F	-0.154285	-0.068790	60355281	-0.085495
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SEX	X443-1	F	-0.164321	-0.076198	64366399	-0.088123
SEX	X444-1	F	-0.159244	-0.071989	66350612	-0.087255
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SEX	X449-1	F	-0.166153	-0.075601	64417543	-0.090552
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SEX	X456-1	F	-0.163151	-0.075256	63827351	-0.087894
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SEX	X51-1	F	-0.162460	-0.077416	33673748	-0.085043
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SEX	X53-1	F	-0.151069	-0.069504	39617986	-0.081564
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SEX	X59-1	F	-0.173217	-0.082953	45149362	-0.090264
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SEX	X69-1	F	-0.178140	-0.087295	35671776	-0.090845
SEX	X70-1	F	-0.179877	-0.087517	34909362	-0.092360
SEX	X71-1	F	-0.168155	-0.079246	38117517	-0.088909
SEX	X72-1	F	-0.170960	-0.081199	36855840	-0.089762
SEX	X73-1	F	-0.168822	-0.080271	37167826	-0.088552
SEX	X74-1	F	-0.167195	-0.078632	38368999	-0.088563
SEX	X75-1	F	-0.164557	-0.077286	38341352	-0.087271
SEX	X76-1	F	-0.157748	-0.073243	39909099	-0.084504
SEX	X77-1	F	-0.172759	-0.082324	36348843	-0.090435
SEX	X78-1	F	-0.155741	-0.071680	37048575	-0.084061
SEX	X79-1	F	-0.167116	-0.079046	32162105	-0.088070
SEX	X80-1	F	-0.164875	-0.078357	34692519	-0.086518
SEX	X81-1	F	-0.171258	-0.081829	34183032	-0.089429
SEX	X82-1	F	-0.154682	-0.071318	37825368	-0.083364
SEX	X83-1	F	-0.150280	-0.068544	43375009	-0.081736
SEX	X84-1	F	-0.151365	-0.069238	42952402	-0.082127
SEX	X85-1	F	-0.146441	-0.067080	36327813	-0.079362
SEX	X86-1	F	-0.145828	-0.065623	44630357	-0.080205
SEX	X87-1	F	-0.149846	-0.067883	41733393	-0.081963
SEX	X88-1	F	-0.161160	-0.075390	37255209	-0.085770
SEX	X89-1	F	-0.127489	-0.053185	52228204	-0.074304
SEX	X90-1	F	-0.173251	-0.082659	37807512	-0.090592
SEX	X91-1	F	-0.165490	-0.078000	37742586	-0.087490
SEX	X92-1	F	-0.165955	-0.078477	31747082	-0.087478
SEX	X93-1	F	-0.166116	-0.078052	40177164	-0.088064
SEX	X94-1	F	-0.132633	-0.057155	43079724	-0.075479
SEX	X95-1	F	-0.151261	-0.068562	43763862	-0.082699
SEX	X96-1	F	-0.164621	-0.077193	34266613	-0.087428
SEX	X97-1	F	-0.172456	-0.082557	39597620	-0.089900
SEX	X98-1	F	-0.140505	-0.062331	37502454	-0.078174
SEX	X99-1	F	-0.126343	-0.053084	41180499	-0.073259
SEX	X13	F	-0.132237	-0.057923	50063087	-0.074314
SEX	X21	F	-0.129823	-0.054662	45478921	-0.075161
SEX	X31	F	-0.125153	-0.052936	42472566	-0.072217
SEX	X41	F	-0.125890	-0.053524	53863634	-0.072366
SEX	X51	F	-0.124800	-0.053313	54716168	-0.071487
SEX	X61	F	-0.125613	-0.053399	50568728	-0.072213
SEX	X71	F	-0.124937	-0.052961	52360772	-0.071976
SEX	X81	F	-0.121552	-0.052234	53226967	-0.069318
SEX	X91	F	-0.125813	-0.053274	57206385	-0.072539
SEX	X10-1	F	-0.124849	-0.052942	56059149	-0.071908
SEX	X11-1	F	-0.125597	-0.053105	58107489	-0.072492
SEX	X12-1	F	-0.126337	-0.053773	57671305	-0.072563
SEX	X13-1	F	-0.124124	-0.052480	56742788	-0.071644
SEX	X14-1	F	-0.124614	-0.052633	57500528	-0.071981
SEX	X15-1	F	-0.132077	-0.055645	60782463	-0.076432
SEX	X16-1	F	-0.122068	-0.051871	53528149	-0.070197
SEX	X17-1	F	-0.125513	-0.053352	52012524	-0.072161
SEX	X18_1	F	-0.135681	-0.059642	56764603	-0.076039
SEX	X19_1	F	-0.130424	-0.056306	58027628	-0.074118
SEX	X20-1	F	-0.118569	-0.050901	34029185	-0.067668
SEX	X21-1	F	-0.119938	-0.052181	35171738	-0.067757
SEX	X22-1	F	-0.121337	-0.052473	40695465	-0.068865
SEX	X23-1	F	-0.116260	-0.049615	33026470	-0.066645
SEX	X24-1	F	-0.117165	-0.049995	30955106	-0.067170
SEX	X25-1	F	-0.116002	-0.050210	30737625	-0.065792
SEX	T1-1	F	-0.117623	-0.050615	34902634	-0.067008
SEX	T2-1	F	-0.118343	-0.050778	33520029	-0.067564
SEX	dmc-04-fca	F	-1.251293	-0.442537	132686	-0.808756
SEX	dmc-04-mca	F	-1.303112	-0.447259	132095	-0.855853
SEX	dmc-1001-fca	F	-1.293089	-0.445275	131799	-0.847814
SEX	dmc-1001-mca	F	-1.249086	-0.439780	131561	-0.809306
SEX	dmc-1206-fca	F	-1.279216	-0.443411	131533	-0.835805
SEX	dmc-1206-mca	F	-1.247098	-0.435232	131941	-0.811866
SEX	dmc-1305-fca	F	-1.220054	-0.436574	132052	-0.783480
SEX	dmc-1307-fca	F	-1.256930	-0.433952	132606	-0.822977
SEX	dmc-1307-mca	F	-1.326898	-0.444033	132867	-0.882865
SEX	dmc-15-fca	F	-1.250142	-0.439329	131444	-0.810813
SEX	dmc-15-mca	F	-1.256145	-0.438691	132407	-0.817454
SEX	dmc-1501-fca	F	-1.275541	-0.442215	132150	-0.833326
SEX	dmc-1702-mca	F	-1.247820	-0.444779	131901	-0.803042
SEX	dmc-1790-ca	F	-1.317802	-0.443718	132653	-0.874083
SEX	dmc-1801-fca	F	-1.242088	-0.441470	131606	-0.800618
SEX	dmc-1801-mca	F	-1.276997	-0.444456	131623	-0.832542
SEX	dmc-1807-fca	F	-1.256806	-0.441211	132202	-0.815596
SEX	dmc-1807-mca	F	-1.275154	-0.444201	132365	-0.830952
SEX	dmc-1809-fca	F	-1.277953	-0.440074	132620	-0.837879
SEX	dmc-1809-mca	F	-1.294439	-0.442366	132990	-0.852073
SEX	dmc-1818-fca	F	-1.270270	-0.438366	132705	-0.831905
SEX	dmc-1818-mca	F	-1.268362	-0.437381	132299	-0.830981
SEX	dmc-202-fca	F	-1.304241	-0.441133	132561	-0.863108
SEX	dmc-202-mca	F	-1.300124	-0.445710	132589	-0.854414
SEX	dmc-217-ca	F	-1.265034	-0.446699	131667	-0.818335
SEX	dmc-304-fca	F	-1.251974	-0.439780	132341	-0.812195
SEX	dmc-304-mca	F	-1.258998	-0.439541	132334	-0.819457
SEX	dmc-603-fca	F	-1.243586	-0.443371	132322	-0.800215
SEX	dmc-603-mca	F	-1.267453	-0.442575	132340	-0.824878
SEX	dmc-604-fca	F	-1.265347	-0.440566	132032	-0.824781
SEX	dmc-604-mca	F	-1.256883	-0.446391	132414	-0.810492
SEX	dmc-955-ca	F	-1.236644	-0.443537	131323	-0.793107
SEX	dmc-956-ca	F	-1.254629	-0.440465	132330	-0.814163
SEX	dmc-oca-03f	F	-1.256697	-0.442604	132366	-0.814093
SEX	dmc-oca-03m	F	-1.303560	-0.446480	132608	-0.857080
SEX	dmc-oca-06f	F	-1.286176	-0.440433	132427	-0.845743
SEX	dmc-oca-06m	F	-1.236572	-0.445015	131619	-0.791557
SEX	dmc-oca-1004f	F	-1.284426	-0.441819	132255	-0.842607
SEX	dmc-oca-1004m	F	-1.300413	-0.445785	132774	-0.854628
SEX	dmc-oca-103f	F	-1.288846	-0.442529	132504	-0.846317
SEX	dmc-oca-103m	F	-1.237389	-0.442374	132339	-0.795016
SEX	dmc-oca-1233f	F	-1.250884	-0.435975	132152	-0.814909
SEX	dmc-oca-1233m	F	-1.272171	-0.444205	132469	-0.827966
SEX	dmc-oca-1301f	F	-1.297033	-0.454144	132560	-0.842889
SEX	dmc-oca-1301m	F	-1.281985	-0.444869	132768	-0.837116
SEX	dmc-oca-1707f	F	-1.272651	-0.441154	132644	-0.831497
SEX	dmc-oca-1707m	F	-1.295579	-0.442332	132401	-0.853247
SEX	dmc-oca-1708m	F	-1.285596	-0.442617	132524	-0.842979
SEX	dmc-oca-1716f	F	-1.243664	-0.445018	132169	-0.798646
SEX	dmc-oca-1716m	F	-1.248476	-0.435413	132321	-0.813062
SEX	dmc-oca-1804f	F	-1.221156	-0.442012	131336	-0.779145
SEX	dmc-oca-1804m	F	-1.260030	-0.443335	132374	-0.816695
SEX	dmc-oca-1834f	F	-1.215289	-0.442479	131461	-0.772809
SEX	dmc-oca-1834m	F	-1.212800	-0.441260	132043	-0.771540
SEX	dmc-oca-701f	F	-1.277470	-0.446862	132547	-0.830608
SEX	dmc-oca-701m	F	-1.243508	-0.443614	130858	-0.799894
SEX	dmc-oca-702f	F	-1.283244	-0.444174	132337	-0.839070
SEX	dmc-oca-702m	F	-1.265793	-0.448024	132392	-0.817769
SEX	dmc-oca-906f	F	-1.256822	-0.442137	132568	-0.814686
SEX	dmc-oca-906m	F	-1.285882	-0.440529	132372	-0.845353
SEX	r.vasanthi	F	-1.280425	-0.441807	135758	-0.838618
SEX	t.ranganathi	F	-1.226222	-0.432653	135363	-0.793569
SEX	tf-014-42	F	-1.221533	-0.442402	135563	-0.779131
SEX	tf-014-44	F	-1.181343	-0.444824	135816	-0.736519
SEX	tf-015-45	F	-1.266009	-0.437900	135109	-0.828108
SEX	tf-016-47	F	-1.238169	-0.436899	135464	-0.801271
SEX	tf-016-48	F	-1.283755	-0.435603	135592	-0.848151
SEX	tf-017-50	F	-1.258316	-0.434349	135708	-0.823968
SEX	tf-017-51	F	-1.056245	-0.432543	130480	-0.623703
SEX	tf-018-53	F	-1.244313	-0.434808	135773	-0.809505
SEX	tf-018-54	F	-1.227729	-0.437509	135272	-0.790220
SEX	tf-019-56	F	-1.211119	-0.435052	135393	-0.776067
SEX	tf-019-57	F	-1.252430	-0.433442	135759	-0.818988
SEX	tf-020-59	F	-1.244886	-0.435854	135840	-0.809032
SEX	tf-020-60	F	-1.270023	-0.430781	135770	-0.839242
SEX	tf-021-62	F	-1.235312	-0.436598	135493	-0.798713
SEX	tf-021-63	F	-1.244690	-0.438665	135492	-0.806025
SEX	tf-022-65	F	-1.278989	-0.440849	135654	-0.838140
SEX	tf-022-66	F	-1.155816	-0.429064	133452	-0.726753
SEX	tf-024-71	F	-1.293173	-0.435134	135405	-0.858038
SEX	tf-024-72	F	-1.178931	-0.443871	135591	-0.735061
SEX	tf-025-74	F	-1.258765	-0.434266	135883	-0.824499
SEX	tf-025-75	F	-1.231985	-0.437272	136152	-0.794713
SEX	tf-026-77	F	-1.264819	-0.435339	136058	-0.829480
SEX	tf-026-78	F	-1.282390	-0.435700	135687	-0.846690
SEX	tf-029-86	F	-1.262309	-0.428756	135607	-0.833553
SEX	tf-029-87	F	-1.007786	-0.442836	130114	-0.564951
SEX	tf-031-92	F	-1.260650	-0.434524	135810	-0.826126
SEX	tf-031-93	F	-1.252005	-0.434124	135615	-0.817881
SEX	tf-032-95	F	-1.251220	-0.436558	135891	-0.814662
SEX	tf-032-96	F	-1.252439	-0.441657	135096	-0.810782
SEX	tf-035-104	F	-1.217927	-0.440945	135638	-0.776981
SEX	tf-035-105	F	-1.106362	-0.451369	135064	-0.654993
SEX	tf-036-107	F	-1.245571	-0.441611	135612	-0.803960
SEX	tf-036-108	F	-1.325954	-0.438324	135018	-0.887630
SEX	tf-037-110	F	-1.249220	-0.434629	135140	-0.814591
SEX	tf-037-111	F	-1.265799	-0.434616	135351	-0.831183
SEX	tf-044-131	F	-1.256394	-0.440696	135888	-0.815698
SEX	tf-044-132	F	-1.282048	-0.433822	135999	-0.848225
SEX	tf-045-134	F	-1.297656	-0.435361	135903	-0.862296
SEX	tf-045-135	F	-1.230333	-0.433381	135173	-0.796952
SEX	tf-046-137	F	-1.260146	-0.433979	135743	-0.826167
SEX	tf-046-138	F	-1.252401	-0.434679	135859	-0.817722
SEX	tf-047-140	F	-1.310191	-0.440571	136081	-0.869621
SEX	tf-047-141	F	-1.276698	-0.436497	135984	-0.840200
SEX	tf-051-152-1	F	-1.284565	-0.441697	136052	-0.842869
SEX	tf-051-153-1	F	-1.317518	-0.437131	135939	-0.880387
SEX	tf-052-155	F	-1.282397	-0.435061	136053	-0.847336
SEX	tf-052-156	F	-1.245074	-0.433346	135480	-0.811728
SEX	tf001-01	F	-1.219285	-0.438074	135551	-0.781211
SEX	tf001-02	F	-1.230140	-0.436483	135273	-0.793657
SEX	tf005-13	F	-1.250182	-0.434016	135586	-0.816166
SEX	tf005-14	F	-1.316176	-0.442147	135459	-0.874030
SEX	tf009-25	F	-1.263731	-0.441045	134392	-0.822686
SEX	tf009-26	F	-1.249452	-0.434259	135300	-0.815193
SEX	tf011-32	F	-1.261767	-0.438105	135570	-0.823662
SEX	tf011-33	F	-1.279764	-0.433352	135635	-0.846412
SEX	tf013-38	F	-1.243638	-0.439948	135565	-0.803690
SEX	tf013-39	F	-1.261527	-0.437004	135280	-0.824523
SEX	tf014-41	F	-1.248662	-0.433584	135216	-0.815078

Apr 13 '21 16:04 toyanji

The program usage pages explains how it arrives to its results

Determine sample sex by checking genotype likelihoods (GL,PL) or genotypes (GT)
in the non-PAR region of chrX. The HWE is assumed, so given the alternate allele
frequency fA and the genotype likelihoods pRR,pRA,pAA, the probabilities are
calculated as
           P(dip) = pRR*(1-fA)^2 + pAA*fA^2 + 2*pRA*(1-fA)*fA
           P(hap) = pRR*(1-fA) + pAA*fA
When genotype likelihoods are not available, the -e option is used to account
for genotyping errors with -t GT. The alternate allele frequency fA is estimated
directly from the data (the default) or can be provided by an INFO tag.

The output then shows how is the sex determined: when the score in the 7th column is negative, the program thinks it is a female, otherwise a male.

You can try to check if there is any correlation between the scores and the sex of the known samples. Next step would be to make sure that the correct allele frequencies are used, also the genotype --error-rate option can be tweaked. It is also a good idea to visually inspect the data: if male samples have many hets in regions where there shouldn't be any, then there is not much the program can do.

Apr 16 '21 16:04 pd3

Dear Sir, Thank you very much for your reply. I checked the predicted gender, they are discordant with what I already know. Would you please clarify on how to use the right allele frequencies?. Do you mean to use a MAF of 0.01 to take only common variants? Mean while I have rerun with giving the option for build and error rate but the result is the same except that some sample towards the later part of the output are called U. please see the output below.

WARNING: bcftools version mismatch .. bcftools at 1.12, the plugin "guess-ploidy" at 1.6

This file was produced by: bcftools +guess-ploidy(1.12+htslib-1.12)

The command line was: bcftools +guess-ploidy -e 1e-3 -g hg19 -v -t GT /gv0/home/jibin/LAB_DATA_FUll/ALL_DATA/Toyanji1/ALL_DATA/ALLdata.vcf.gz

[1]SEX [2]Sample [3]Predicted sex [4]log P(Haploid)/nSites [5]log P(Diploid)/nSites [6]nSites [7]Score: F < 0 < M ($4-$5)

SEX YO01 F -0.316699 -0.152321 207566 -0.164378 SEX YO02 F -0.293730 -0.143160 204421 -0.150570 SEX YO03 F -0.374985 -0.156123 298947 -0.218862 SEX YO04 F -0.291594 -0.145793 218829 -0.145801 SEX YO05 F -0.372872 -0.154693 307303 -0.218178 SEX YO06 F -0.365019 -0.152234 308492 -0.212784 SEX YO07 F -0.381893 -0.154610 300302 -0.227283 SEX YO08 F -0.341064 -0.166772 226898 -0.174292 SEX YO09 F -0.322147 -0.158396 201355 -0.163751 SEX YO10 F -0.368365 -0.158077 288920 -0.210288 SEX YO100 F -0.391864 -0.161292 319641 -0.230571 SEX YO101 F -0.286297 -0.140448 205733 -0.145849 SEX YO102 F -0.315573 -0.153985 236166 -0.161589 SEX YO103 F -0.297442 -0.149353 226924 -0.148088 SEX YO104 F -0.315138 -0.154265 226278 -0.160873 SEX YO106 F -0.317616 -0.161639 233411 -0.155977 SEX YO107 F -0.351886 -0.148850 283064 -0.203036 SEX YO108 F -0.310524 -0.151778 224659 -0.158745 SEX YO109 F -0.364679 -0.156832 284644 -0.207847 SEX YO11 F -0.303562 -0.150178 227251 -0.153383 SEX YO110 F -0.329062 -0.156511 238654 -0.172551 SEX YO111 F -0.339871 -0.161754 249566 -0.178117 SEX YO112 F -0.315570 -0.155250 211031 -0.160319 SEX YO113 F -0.388354 -0.166093 273440 -0.222261 SEX YO114 F -0.393692 -0.168206 285546 -0.225487 SEX YO115 F -0.438396 -0.187035 272973 -0.251361 SEX YO116 F -0.297991 -0.149665 205810 -0.148326 SEX YO117 F -0.310670 -0.154624 224617 -0.156046 SEX YO118 F -0.322261 -0.155564 220626 -0.166698 SEX YO119 F -0.409643 -0.167387 311506 -0.242257 SEX YO12 F -0.309722 -0.144572 218606 -0.165150 SEX YO120 F -0.311837 -0.151021 213133 -0.160816 SEX YO121 F -0.383036 -0.158184 273606 -0.224852 SEX YO122 F -0.317108 -0.160010 174628 -0.157098 SEX YO123 F -0.332847 -0.158947 219035 -0.173900 SEX YO124 F -0.309186 -0.153857 193434 -0.155330 SEX YO125 F -0.292090 -0.145056 192503 -0.147034 SEX YO126 F -0.311254 -0.148103 197952 -0.163151 SEX YO127 F -0.381534 -0.155382 285832 -0.226152 SEX YO128 F -0.306791 -0.149716 219295 -0.157075 SEX YO129 F -0.326355 -0.159121 206963 -0.167235 SEX YO13 F -0.323994 -0.156263 239899 -0.167731 SEX YO130 F -0.333287 -0.162186 169495 -0.171102 SEX YO131 F -0.393267 -0.164584 310474 -0.228682 SEX YO132 F -0.291351 -0.146833 197574 -0.144518 SEX YO133 F -0.306278 -0.149509 201938 -0.156769 SEX YO134 F -0.362023 -0.150555 287212 -0.211468 SEX YO135 F -0.367080 -0.157167 295944 -0.209913 SEX YO136 F -0.374943 -0.147142 202867 -0.227800 SEX YO137 F -0.300043 -0.148213 203533 -0.151830 SEX YO138 F -0.411500 -0.173627 276790 -0.237873 SEX YO139 F -0.379570 -0.158696 270512 -0.220874 SEX YO14 F -0.368924 -0.164161 306231 -0.204763 SEX YO140 F -0.315186 -0.153487 203176 -0.161699 SEX YO141 F -0.294139 -0.146155 206593 -0.147984 SEX YO142 F -0.316973 -0.153425 209015 -0.163549 SEX YO143 F -0.322735 -0.154855 207002 -0.167880 SEX YO145 F -0.331685 -0.156041 196352 -0.175644 SEX YO146 F -0.322629 -0.156293 193232 -0.166336 SEX YO147 F -0.295867 -0.145502 210534 -0.150365 SEX YO148 F -0.303243 -0.145418 216903 -0.157825 SEX YO149 F -0.290283 -0.142276 199277 -0.148008 SEX YO15 F -0.336581 -0.163234 225640 -0.173347 SEX YO150 F -0.276205 -0.139408 200979 -0.136797 SEX YO151 F -0.375001 -0.151152 289585 -0.223849 SEX YO152 F -0.376520 -0.154104 175685 -0.222416 SEX YO153 F -0.433453 -0.172830 181396 -0.260623 SEX YO154 F -0.363200 -0.170047 126632 -0.193153 SEX YO155 F -0.344610 -0.172519 124415 -0.172091 SEX YO156 F -0.389271 -0.160674 192699 -0.228597 SEX YO157 F -0.315477 -0.151259 220841 -0.164218 SEX YO158 F -0.380920 -0.157766 191374 -0.223153 SEX YO159 F -0.337935 -0.164767 133232 -0.173168 SEX YO16 F -0.364558 -0.170996 234237 -0.193562 SEX YO160 F -0.347668 -0.168126 130471 -0.179542 SEX YO161 F -0.352683 -0.170324 132800 -0.182359 SEX YO162 F -0.380537 -0.156791 200239 -0.223746 SEX YO163 F -0.358793 -0.147539 180289 -0.211255 SEX YO164 F -0.324465 -0.159435 138986 -0.165030 SEX YO165 F -0.340369 -0.162928 135802 -0.177440 SEX YO166 F -0.410602 -0.163378 188604 -0.247224 SEX YO167 F -0.369007 -0.174189 145624 -0.194817 SEX YO168 F -0.340696 -0.164287 126677 -0.176409 SEX YO169 F -0.313427 -0.159514 122009 -0.153913 SEX YO17 F -0.306371 -0.150406 215590 -0.155964 SEX YO171 F -0.347164 -0.168024 133864 -0.179140 SEX YO172 F -0.405160 -0.164272 192148 -0.240888 SEX YO173 F -0.400600 -0.163744 192542 -0.236856 SEX YO175 F -0.416023 -0.170711 190055 -0.245312 SEX YO176 F -0.405457 -0.161259 181205 -0.244197 SEX YO177 F -0.333015 -0.165436 117911 -0.167578 SEX YO178 F -0.329797 -0.161482 116306 -0.168315 SEX YO179 F -0.401976 -0.159051 185147 -0.242925 SEX YO18 F -0.306555 -0.151925 229241 -0.154630 SEX YO180 F -0.410128 -0.170433 179902 -0.239695 SEX YO181 F -0.354073 -0.174032 129505 -0.180041 SEX YO183 F -0.399004 -0.165056 180138 -0.233948 SEX YO184 F -0.333022 -0.159058 128357 -0.173964 SEX YO185 F -0.376568 -0.158134 184432 -0.218435 SEX YO186 F -0.337816 -0.162556 122818 -0.175260 SEX YO187 F -0.313869 -0.163695 111191 -0.150174 SEX YO189 F -0.388900 -0.165914 172713 -0.222986 SEX YO19 F -0.360653 -0.151742 325962 -0.208910 SEX YO190 F -0.323052 -0.161607 117733 -0.161445 SEX YO191 F -0.390776 -0.161616 209633 -0.229160 SEX YO192 F -0.419025 -0.163745 208119 -0.255280 SEX YO193 F -0.322189 -0.159796 135402 -0.162393 SEX YO194 F -0.399490 -0.164119 171407 -0.235371 SEX YO195 F -0.350045 -0.168209 118045 -0.181836 SEX YO196 F -0.339812 -0.165574 129383 -0.174239 SEX YO197 F -0.420130 -0.166869 201630 -0.253261 SEX YO198 F -0.405590 -0.162882 172878 -0.242708 SEX YO199 F -0.355074 -0.165973 129440 -0.189101 SEX YO20 F -0.296641 -0.146173 206810 -0.150468 SEX YO200 F -0.332533 -0.162103 124772 -0.170430 SEX YO201 F -0.327491 -0.158629 120365 -0.168863 SEX YO202 F -0.354238 -0.171923 115518 -0.182315 SEX YO203 F -0.412168 -0.165772 166420 -0.246397 SEX YO204 F -0.367581 -0.153386 221498 -0.214195 SEX YO205 F -0.305810 -0.148760 185157 -0.157050 SEX YO206 F -0.378676 -0.153262 275875 -0.225414 SEX YO207 F -0.310020 -0.152741 182443 -0.157279 SEX YO208 F -0.388656 -0.162470 269267 -0.226186 SEX YO209 F -0.361149 -0.150104 246501 -0.211046 SEX YO21 F -0.303941 -0.150725 249382 -0.153216 SEX YO211 F -0.292089 -0.144241 193432 -0.147848 SEX YO213 F -0.316492 -0.153228 182840 -0.163264 SEX YO214 F -0.322316 -0.154819 179621 -0.167497 SEX YO215 F -0.341569 -0.174552 149328 -0.167016 SEX YO216 F -0.323500 -0.165251 158312 -0.158249 SEX YO217 F -0.418023 -0.176528 265548 -0.241495 SEX YO218 F -0.350866 -0.173762 170343 -0.177104 SEX YO219 F -0.311393 -0.151918 218607 -0.159476 SEX YO22 F -0.354760 -0.150500 298709 -0.204260 SEX YO220 F -0.376887 -0.182852 161843 -0.194035 SEX YO221 F -0.385988 -0.196480 173298 -0.189509 SEX YO222 F -0.334263 -0.158865 184795 -0.175398 SEX YO223 F -0.411465 -0.179751 251718 -0.231714 SEX YO224 F -0.306256 -0.148820 176207 -0.157436 SEX YO225 F -0.310480 -0.153768 227308 -0.156712 SEX YO226 F -0.410954 -0.174616 301963 -0.236339 SEX YO227 F -0.370360 -0.150883 219730 -0.219477 SEX YO228 F -0.306743 -0.153212 179121 -0.153531 SEX YO229 F -0.323485 -0.161971 168824 -0.161514 SEX YO23 F -0.294947 -0.146087 196779 -0.148861 SEX YO230 F -0.309707 -0.152896 210748 -0.156811 SEX YO231 F -0.296930 -0.145436 213363 -0.151495 SEX YO233 F -0.297237 -0.148335 202867 -0.148903 SEX YO234 F -0.361059 -0.179942 159287 -0.181117 SEX YO238 F -0.360274 -0.173193 195630 -0.187081 SEX YO239 F -0.341859 -0.171441 178777 -0.170418 SEX YO24 F -0.365030 -0.153599 280874 -0.211431 SEX YO241 F -0.323714 -0.157330 214960 -0.166385 SEX YO243 F -0.465873 -0.224878 187293 -0.240995 SEX YO245 F -0.406286 -0.171671 332242 -0.234615 SEX YO246 F -0.299050 -0.149326 252590 -0.149724 SEX YO247 F -0.348316 -0.172187 235598 -0.176129 SEX YO248 F -0.321431 -0.162956 247132 -0.158476 SEX YO249 F -0.346298 -0.167921 209308 -0.178376 SEX YO25 F -0.301102 -0.149018 192727 -0.152084 SEX YO250 F -0.354644 -0.166111 239933 -0.188534 SEX YO251 F -0.284983 -0.145267 225164 -0.139716 SEX YO252 F -0.333129 -0.167719 226918 -0.165410 SEX YO254 F -0.332663 -0.162259 210321 -0.170403 SEX YO255 F -0.300799 -0.146728 225978 -0.154070 SEX YO256 F -0.302675 -0.147167 220554 -0.155507 SEX YO257 F -0.323004 -0.156794 201066 -0.166210 SEX YO258 F -0.318828 -0.151704 201975 -0.167124 SEX YO259 F -0.324737 -0.162512 206725 -0.162225 SEX YO26 F -0.293536 -0.145225 211173 -0.148311 SEX YO260 F -0.371921 -0.153898 310296 -0.218023 SEX YO261 F -0.371448 -0.149737 303330 -0.221711 SEX YO262 F -0.314134 -0.151195 219290 -0.162939 SEX YO263 F -0.316759 -0.152133 221743 -0.164626 SEX YO264 F -0.306363 -0.149663 222471 -0.156701 SEX YO266 F -0.281368 -0.136728 180114 -0.144640 SEX YO267 F -0.290613 -0.143517 193227 -0.147096 SEX YO268 F -0.395988 -0.194422 185809 -0.201566 SEX YO27 F -0.293339 -0.143244 213442 -0.150096 SEX YO28 F -0.298689 -0.147100 187281 -0.151589 SEX YO29 F -0.396722 -0.161441 315112 -0.235281 SEX YO30 F -0.300125 -0.148418 218217 -0.151707 SEX YO31 F -0.297462 -0.148125 209332 -0.149337 SEX YO32 F -0.306786 -0.150576 219932 -0.156210 SEX YO33 F -0.298023 -0.147366 209623 -0.150658 SEX YO34 F -0.315400 -0.152886 208269 -0.162514 SEX YO35 F -0.382731 -0.155299 301482 -0.227432 SEX YO36 F -0.375469 -0.156026 304763 -0.219443 SEX YO37 F -0.369682 -0.149476 285488 -0.220206 SEX YO38 F -0.292799 -0.144725 210379 -0.148074 SEX YO39 F -0.310148 -0.148898 214604 -0.161250 SEX YO40 F -0.424907 -0.184631 327322 -0.240277 SEX YO41 F -0.333808 -0.164273 194534 -0.169535 SEX YO42 F -0.318509 -0.154387 202340 -0.164122 SEX YO43 F -0.345860 -0.168676 210760 -0.177184 SEX YO44 F -0.343843 -0.169230 198939 -0.174614 SEX YO45 F -0.332586 -0.163697 194522 -0.168888 SEX YO46 F -0.369433 -0.159002 342781 -0.210431 SEX YO47 F -0.345508 -0.176338 185260 -0.169170 SEX YO48 F -0.363023 -0.181962 194676 -0.181061 SEX YO49 F -0.368599 -0.186718 224575 -0.181881 SEX YO50 F -0.291632 -0.143991 195398 -0.147641 SEX YO51 F -0.343381 -0.142366 266332 -0.201015 SEX YO52 F -0.351773 -0.143175 275517 -0.208598 SEX YO53 F -0.346943 -0.141908 278853 -0.205035 SEX YO54 F -0.332826 -0.140340 274688 -0.192486 SEX YO55 F -0.301490 -0.145359 213188 -0.156131 SEX YO56 F -0.319954 -0.139476 228627 -0.180478 SEX YO57 F -0.290743 -0.144812 239835 -0.145931 SEX YO58 F -0.301858 -0.149825 229500 -0.152033 SEX YO59 F -0.296596 -0.149576 238524 -0.147020 SEX YO60 F -0.281304 -0.139650 184384 -0.141654 SEX YO61 F -0.288618 -0.144436 252319 -0.144183 SEX YO62 F -0.288395 -0.142909 240731 -0.145487 SEX YO63 F -0.297203 -0.145349 229243 -0.151854 SEX YO64 F -0.380768 -0.154432 331495 -0.226336 SEX YO65 F -0.303074 -0.150423 199258 -0.152651 SEX YO66 F -0.410846 -0.174337 257527 -0.236509 SEX YO67 F -0.316768 -0.159512 159945 -0.157256 SEX YO68 F -0.312362 -0.154328 216245 -0.158034 SEX YO69 F -0.292457 -0.142098 175797 -0.150359 SEX YO70 F -0.368011 -0.150272 260757 -0.217739 SEX YO71 F -0.322402 -0.157007 185425 -0.165395 SEX YO72 F -0.369991 -0.148603 271766 -0.221388 SEX YO73 F -0.301685 -0.144547 182495 -0.157138 SEX YO74 F -0.319513 -0.154196 233899 -0.165317 SEX YO75 F -0.479318 -0.250549 164136 -0.228769 SEX YO76 F -0.367118 -0.148666 256297 -0.218452 SEX YO77 F -0.369508 -0.152830 255531 -0.216678 SEX YO78 F -0.376424 -0.158097 314700 -0.218326 SEX YO79 F -0.279211 -0.138240 195904 -0.140971 SEX YO80 F -0.299310 -0.148025 191510 -0.151284 SEX YO81 F -0.305228 -0.148930 198940 -0.156298 SEX YO82 F -0.292515 -0.144078 188081 -0.148437 SEX YO83 F -0.308089 -0.146544 187021 -0.161545 SEX YO84 F -0.301865 -0.144730 175800 -0.157135 SEX YO85 F -0.374224 -0.147214 258162 -0.227009 SEX YO86 F -0.359686 -0.147407 263920 -0.212279 SEX YO87 F -0.302910 -0.143736 203008 -0.159175 SEX YO88 F -0.325657 -0.152686 193646 -0.172971 SEX YO89 F -0.301657 -0.149199 191906 -0.152458 SEX YO90 F -0.294559 -0.147140 229151 -0.147419 SEX YO91 F -0.299777 -0.148118 176058 -0.151659 SEX YO92 F -0.313360 -0.151866 185621 -0.161494 SEX YO93 F -0.282114 -0.141025 180317 -0.141089 SEX YO94 F -0.308884 -0.157223 279456 -0.151661 SEX YO95 F -0.290685 -0.144666 187616 -0.146019 SEX YO96 F -0.308238 -0.151595 231297 -0.156642 SEX YO97 F -0.417642 -0.185738 278745 -0.231904 SEX YO98 F -0.288899 -0.145907 176359 -0.142991 SEX 01 F -0.096325 -0.045873 1573337 -0.050452 SEX A1 F -0.122810 -0.053965 2006799 -0.068845 SEX B1 F -0.120211 -0.054242 1467277 -0.065969 SEX D1 F -0.098197 -0.046453 1571287 -0.051743 SEX E1 F -0.086938 -0.045653 853843 -0.041284 SEX F4 F -0.083424 -0.047842 972727 -0.035582 SEX H1 F -0.085822 -0.048990 909808 -0.036832 SEX HP1 F -0.084897 -0.049268 783371 -0.035628 SEX N01-301 F -0.123641 -0.060039 766239 -0.063602 SEX N01-303 F -0.117817 -0.061605 691880 -0.056213 SEX N01-304 F -0.119015 -0.059648 562758 -0.059366 SEX N01-305 F -0.116502 -0.061675 674154 -0.054827 SEX N01-306 F -0.117888 -0.054878 1123363 -0.063009 SEX N01-308 F -0.117888 -0.054878 1123363 -0.063009 SEX N01-310 F -0.109650 -0.049913 1098020 -0.059737 SEX N01-311 F -0.105896 -0.055499 752313 -0.050397 SEX N01-312 F -0.111565 -0.055652 794995 -0.055914 SEX N01-313 F -0.116560 -0.054425 1242018 -0.062135 SEX N01-314 F -0.124443 -0.056152 1516613 -0.068291 SEX N01-315 F -0.116884 -0.053437 1184036 -0.063448 SEX N01-317 F -0.148320 -0.071982 1020671 -0.076338 SEX N01-318 F -0.123336 -0.059732 894386 -0.063603 SEX N01-319 F -0.137868 -0.065134 1333219 -0.072734 SEX N01-321 F -0.116088 -0.054420 1466968 -0.061668 SEX N01-322 F -0.121790 -0.059377 811372 -0.062413 SEX N01-324 F -0.212104 -0.110616 1612273 -0.101487 SEX N01-325 F -0.133296 -0.061871 1805186 -0.071425 SEX N01-326 F -0.160377 -0.078837 1298422 -0.081540 SEX N01-327 F -0.125558 -0.059098 1686131 -0.066460 SEX N01-328 F -0.123507 -0.061315 997875 -0.062191 SEX N01-329 F -0.122835 -0.059114 940628 -0.063721 SEX N01-330 F -0.120796 -0.057003 1554736 -0.063794 SEX N01-331 F -0.113474 -0.057393 898250 -0.056081 SEX N01-332 F -0.117993 -0.057730 1498017 -0.060262 SEX N01-333 F -0.113876 -0.056646 839992 -0.057230 SEX N01-334 F -0.123033 -0.059868 1567244 -0.063165 SEX N01-335 F -0.116940 -0.053609 1433033 -0.063331 SEX N01-337 F -0.116058 -0.056009 989129 -0.060049 SEX N01-338 U 0.500000 0.500000 0 0.000000 SEX N01-339 F -0.110745 -0.054077 937712 -0.056668 SEX N01-340 F -0.110376 -0.055734 894549 -0.054642 SEX N01-341 F -0.118890 -0.058291 927538 -0.060599 SEX N01-342 F -0.111007 -0.055382 1004418 -0.055625 SEX N01-343 F -0.119917 -0.057697 1519617 -0.062220 SEX N01-344 F -0.130086 -0.068838 1056987 -0.061248 SEX N01-345 F -0.124679 -0.058941 1628936 -0.065738 SEX N01-346 F -0.113350 -0.053057 1618624 -0.060293 SEX N01-347 F -0.106988 -0.053358 1166743 -0.053630 SEX N01-348 F -0.113056 -0.055542 1094280 -0.057514 SEX N01-349 F -0.113041 -0.053802 954808 -0.059238 SEX N01-350 F -0.118965 -0.057585 770496 -0.061380 SEX N01-351 F -0.117292 -0.055426 1547367 -0.061866 SEX N01-352 F -0.112597 -0.056352 1191385 -0.056245 SEX N01-353 F -0.107274 -0.055966 941129 -0.051308 SEX N01-354 F -0.118430 -0.055047 1949837 -0.063383 SEX N01-355 F -0.115193 -0.057318 1295722 -0.057875 SEX N01-356 F -0.103192 -0.053753 817915 -0.049438 SEX N01-357 F -0.091157 -0.045190 703561 -0.045967 SEX N01-358 F -0.079623 -0.045673 534721 -0.033950 SEX N01-359 F -0.101012 -0.050074 1002797 -0.050937 SEX N01-360 F -0.089702 -0.043070 789410 -0.046631 SEX N01-397 F -0.087871 -0.042881 727398 -0.044990 SEX N01-398 F -0.086389 -0.042845 834148 -0.043544 SEX N01-399 F -0.092772 -0.044824 792064 -0.047948 SEX N01-400 F -0.082485 -0.045508 948932 -0.036978 SEX N01-401 F -0.096138 -0.045630 805160 -0.050509 SEX N01-402 F -0.081307 -0.046200 510322 -0.035108 SEX N01-403 F -0.081487 -0.045879 566234 -0.035608 SEX N01-404 F -0.080178 -0.045924 508587 -0.034254 SEX N01-405 F -0.080861 -0.046824 516589 -0.034037 SEX N01-409 F -0.076416 -0.044320 547554 -0.032096 SEX N01-410 F -0.080681 -0.045789 537448 -0.034892 SEX N01-413 F -0.087181 -0.049596 568322 -0.037585 SEX N01-414 F -0.089667 -0.043646 931763 -0.046021 SEX N01-415 F -0.083408 -0.045822 594374 -0.037586 SEX N01-416 F -0.090997 -0.043933 777897 -0.047064 SEX N01-417 F -0.076416 -0.043601 564655 -0.032815 SEX N01-418 F -0.080304 -0.043963 539949 -0.036341 SEX N01-419 F -0.088047 -0.048403 525201 -0.039644 SEX N01-422 F -0.078435 -0.045193 485783 -0.033243 SEX N01-423 F -0.093064 -0.044480 779328 -0.048583 SEX N01-424 F -0.081688 -0.045639 537252 -0.036049 SEX N01-425 F -0.089159 -0.043361 773464 -0.045798 SEX N01-426 F -0.087414 -0.042846 719876 -0.044569 SEX N01-427 F -0.082765 -0.046044 596547 -0.036721 SEX N01-428 F -0.094102 -0.045878 757192 -0.048224 SEX N01-429 F -0.088797 -0.042984 794381 -0.045813 SEX N01-430 F -0.085140 -0.047320 467381 -0.037820 SEX N01-431 F -0.088497 -0.042052 789339 -0.046445 SEX N01-432 F -0.080513 -0.044975 536468 -0.035538 SEX N01-433 F -0.077711 -0.043693 498002 -0.034018 SEX N01-434 F -0.090440 -0.044294 763866 -0.046146 SEX N01-435 F -0.087347 -0.047614 511830 -0.039733 SEX N01-436 F -0.096497 -0.047238 940238 -0.049259 SEX N01-437 F -0.088312 -0.046586 753730 -0.041726 SEX N01-438 F -0.092349 -0.044734 699656 -0.047615 SEX N01-439 F -0.084953 -0.047731 458584 -0.037223 SEX N01-440 F -0.082499 -0.045737 468012 -0.036762 SEX N01-441 F -0.093324 -0.044224 791632 -0.049100 SEX N01-442 F -0.090035 -0.043740 831696 -0.046295 SEX N01-443 F -0.072541 -0.041734 528781 -0.030807 SEX N01-445-01 F -0.091875 -0.044426 905835 -0.047449 SEX N01-445-02 F -0.081784 -0.045413 507980 -0.036371 SEX N01-446-01 F -0.094107 -0.046795 804755 -0.047312 SEX N01-446-02 F -0.086957 -0.049090 750805 -0.037866 SEX N01-447 F -0.083734 -0.046499 526970 -0.037235 SEX NBS1 F -0.081813 -0.045172 1256169 -0.036641 SEX S1 F -0.097307 -0.048667 1252451 -0.048641 SEX S3 F -0.098159 -0.051015 1408834 -0.047144 SEX X100-1 F -0.100967 -0.048258 1709238 -0.052709 SEX X101-1 F -0.085552 -0.045591 1075739 -0.039961 SEX X102-1 F -0.106287 -0.052760 1414981 -0.053527 SEX X103-1 F -0.106181 -0.056630 860109 -0.049551 SEX X104-1 F -0.142539 -0.074761 1330864 -0.067778 SEX X105-1 F -0.119583 -0.064446 765675 -0.055137 SEX X106-1 F -0.130113 -0.072257 850838 -0.057857 SEX X107-1 F -0.152649 -0.085545 782850 -0.067104 SEX X108-1 F -0.150753 -0.080236 1338242 -0.070517 SEX X109-1 F -0.158532 -0.084461 1095207 -0.074071 SEX X110-1 F -0.152576 -0.080181 1398943 -0.072395 SEX X111-1 F -0.174246 -0.093258 1389984 -0.080988 SEX X112-1 F -0.161856 -0.090099 933835 -0.071757 SEX X113-1 F -0.172310 -0.093689 1205857 -0.078621 SEX X114-1 F -0.172290 -0.092631 1393633 -0.079659 SEX X115-1 F -0.177942 -0.097884 1331798 -0.080058 SEX X116-1 F -0.171353 -0.094339 918199 -0.077014 SEX X117-1 F -0.166071 -0.092808 749878 -0.073262 SEX X118-1 F -0.170121 -0.095815 952456 -0.074307 SEX X119-1 F -0.156591 -0.089656 1102763 -0.066936 SEX X121-1 F -0.161011 -0.088935 894852 -0.072076 SEX X122-1 F -0.168627 -0.094456 911731 -0.074171 SEX X123-1 F -0.179263 -0.101855 767492 -0.077408 SEX X124-1 F -0.171683 -0.094006 938982 -0.077677 SEX X125-1 F -0.181443 -0.102033 956425 -0.079410 SEX X126-1 F -0.178716 -0.097573 1574614 -0.081142 SEX X127-1 F -0.179004 -0.102356 634732 -0.076648 SEX X128-1 F -0.170373 -0.092773 1442556 -0.077600 SEX X129-1 F -0.195274 -0.104088 1537958 -0.091186 SEX X130-1 F -0.141614 -0.075619 1530521 -0.065995 SEX X131-1 F -0.176283 -0.096128 1409056 -0.080154 SEX X132-1 F -0.198777 -0.107580 1497309 -0.091198 SEX X133-1-1 F -0.165948 -0.089219 1676684 -0.076729 SEX X134-1 F -0.200786 -0.109679 1699906 -0.091106 SEX X135-1 F -0.199529 -0.106629 2070385 -0.092901 SEX X136-1 F -0.135526 -0.071523 1161130 -0.064004 SEX X137-1 F -0.177396 -0.094804 1422041 -0.082592 SEX X138-1 F -0.209437 -0.113514 2236960 -0.095923 SEX X139-1 F -0.185700 -0.097530 2243443 -0.088169 SEX X140-1 F -0.177698 -0.094487 2148979 -0.083211 SEX X141-1 F -0.136627 -0.070963 1434157 -0.065664 SEX X142-1 F -0.177823 -0.095356 1393049 -0.082467 SEX X143-1 F -0.126536 -0.066046 1983399 -0.060489 SEX X144-1 F -0.128012 -0.066508 1673950 -0.061504 SEX X145-1 F -0.174275 -0.092361 2363117 -0.081914 SEX X146-1 F -0.117696 -0.059276 1258650 -0.058421 SEX X147-1 F -0.172157 -0.091658 2066200 -0.080499 SEX X148-1 F -0.150401 -0.078938 2286093 -0.071463 SEX X149-1 F -0.100853 -0.049811 1226504 -0.051042 SEX X150-1 F -0.143351 -0.072661 2307961 -0.070690 SEX X151-1 F -0.187414 -0.103016 1566863 -0.084398 SEX X152-1 F -0.146150 -0.076778 2111283 -0.069372 SEX X153-1 F -0.154797 -0.080951 1819501 -0.073845 SEX X154-1 F -0.144194 -0.076273 1251004 -0.067921 SEX X155-1 F -0.160724 -0.083878 2015603 -0.076846 SEX X156-1 F -0.155632 -0.080561 2078635 -0.075071 SEX X158-1 F -0.149603 -0.077337 2019887 -0.072266 SEX X159-1 F -0.159741 -0.084849 1448299 -0.074892 SEX X160-1 F -0.147353 -0.076450 1880161 -0.070902 SEX X161-1 F -0.132697 -0.059362 627 -0.073335 SEX X162-1 F -0.177177 -0.093126 2045738 -0.084051 SEX X166-1 F -0.136236 -0.072949 1298262 -0.063287 SEX X167-1 F -0.146835 -0.075299 2048641 -0.071535 SEX X168-1 F -0.159923 -0.083996 1831029 -0.075927 SEX X169-1 F -0.146474 -0.075143 2088068 -0.071331 SEX X170-1 F -0.140406 -0.072008 2035703 -0.068398 SEX X171-1 F -0.135550 -0.071781 1203390 -0.063769 SEX X172-1 F -0.184011 -0.097386 2360493 -0.086625 SEX X201-1 F -0.138864 -0.070577 2367995 -0.068287 SEX X202-1 F -0.136162 -0.069406 1758507 -0.066755 SEX X203-1 F -0.147931 -0.076146 2240488 -0.071785 SEX X204-1 F -0.079231 -0.044943 555031 -0.034289 SEX X205-1 F -0.170123 -0.087777 1715969 -0.082346 SEX X206-1 F -0.129489 -0.065938 1730630 -0.063551 SEX X207-1 F -0.127110 -0.064357 1489323 -0.062753 SEX X208-1 F -0.154627 -0.079516 2470492 -0.075111 SEX X209-1 F -0.150140 -0.079024 1465244 -0.071116 SEX X210-1 F -0.157920 -0.082743 1678772 -0.075177 SEX X211-1 F -0.161054 -0.078847 2371550 -0.082208 SEX X212-1 F -0.150877 -0.078700 1570038 -0.072177 SEX X213-1 F -0.169150 -0.082303 2658089 -0.086847 SEX X214-1 F -0.152872 -0.077383 2370441 -0.075488 SEX X215-1 F -0.163781 -0.085336 2294259 -0.078445 SEX X216-1 F -0.145792 -0.074040 2348765 -0.071752 SEX X217-1 F -0.155944 -0.082837 1432644 -0.073107 SEX X218-1 F -0.174022 -0.087521 2163489 -0.086501 SEX X219-1 F -0.091993 -0.044789 820363 -0.047204 SEX X220-1 F -0.152100 -0.080751 1443290 -0.071349 SEX X221-1 F -0.152712 -0.080779 1351378 -0.071933 SEX X222-1 F -0.156306 -0.079816 2224271 -0.076490 SEX X223-1 F -0.153487 -0.078041 2103924 -0.075445 SEX X224-1 F -0.162914 -0.080647 1786313 -0.082267 SEX X225-1 F -0.167435 -0.088206 1391190 -0.079229 SEX X226-1 F -0.161365 -0.084622 1431831 -0.076743 SEX X227-1 F -0.139048 -0.072352 1305167 -0.066695 SEX X228-1 F -0.158475 -0.082465 1332051 -0.076010 SEX X229-1 F -0.140026 -0.075605 969541 -0.064421 SEX X230-1 F -0.137736 -0.073284 1446491 -0.064452 SEX X231-1 F -0.134688 -0.072121 815544 -0.062567 SEX X232-1 F -0.158710 -0.080586 1019799 -0.078123 SEX X233-1 F -0.145845 -0.077702 1317871 -0.068143 SEX X234-1 F -0.129684 -0.073766 619584 -0.055917 SEX X235-1 F -0.135880 -0.072344 922372 -0.063536 SEX X236-1 F -0.133844 -0.074421 786244 -0.059423 SEX X237-1 F -0.121887 -0.060202 717450 -0.061685 SEX X238-1 F -0.145655 -0.075217 1376533 -0.070438 SEX X239-1 F -0.127231 -0.068559 1067896 -0.058672 SEX X240-1 F -0.123974 -0.061557 773681 -0.062417 SEX X241-1 F -0.141413 -0.073909 1068272 -0.067504 SEX X242-1 F -0.091460 -0.044205 895280 -0.047255 SEX X243-1 F -0.116319 -0.064697 659178 -0.051622 SEX X244-1 F -0.080995 -0.045205 522473 -0.035790 SEX X245-1 F -0.080595 -0.044705 578636 -0.035890 SEX X246-1 F -0.132363 -0.069050 1309492 -0.063313 SEX X247-1 F -0.153310 -0.082471 787149 -0.070839 SEX X248-1 F -0.132885 -0.069322 1221822 -0.063564 SEX X249-1 F -0.152255 -0.082620 838480 -0.069635 SEX X250-1 F -0.123871 -0.066890 1002039 -0.056981 SEX X251-1 F -0.108572 -0.061433 533576 -0.047138 SEX X252-1 F -0.129651 -0.067676 1145957 -0.061975 SEX X253-1 F -0.134236 -0.066026 1240016 -0.068209 SEX X254-1 F -0.142868 -0.074571 1326460 -0.068296 SEX X255-1 F -0.139798 -0.076304 939003 -0.063493 SEX X256-1 F -0.081719 -0.045142 543121 -0.036576 SEX X257-1 F -0.135621 -0.068043 958372 -0.067578 SEX X258-1 F -0.097297 -0.047432 857722 -0.049866 SEX X259-1 F -0.084356 -0.047080 542985 -0.037276 SEX X26-1 F -0.068933 -0.040966 819248 -0.027967 SEX X260-1 F -0.117961 -0.063508 913979 -0.054453 SEX X261-1 F -0.149721 -0.079074 125221 -0.070646 SEX X263-1 F -0.127355 -0.069743 917932 -0.057612 SEX X264-1 F -0.119234 -0.062460 895326 -0.056774 SEX X265-1 F -0.091372 -0.044385 803297 -0.046987 SEX X266-1 F -0.125238 -0.068437 835205 -0.056801 SEX X267-1 F -0.126185 -0.067131 1181078 -0.059054 SEX X268-1 F -0.148884 -0.077499 1377467 -0.071385 SEX X269-1 F -0.147255 -0.077574 1309726 -0.069681 SEX X270-1 F -0.209993 -0.111039 2114282 -0.098954 SEX X271-1 F -0.136653 -0.071287 1539761 -0.065366 SEX X272-1 F -0.132250 -0.070716 885384 -0.061534 SEX X273-1 F -0.134937 -0.072713 805238 -0.062224 SEX X274-1 F -0.121938 -0.061444 954913 -0.060493 SEX X275-1 F -0.081329 -0.045811 479530 -0.035517 SEX X276-1 F -0.090461 -0.044075 852696 -0.046387 SEX X301-1 F -0.174099 -0.087893 2163359 -0.086206 SEX X302-1 F -0.149098 -0.077734 1541665 -0.071363 SEX X303-1 F -0.198557 -0.107994 1548939 -0.090563 SEX X306-1 F -0.154863 -0.080592 1984021 -0.074271 SEX X309-1 F -0.133461 -0.072229 1049307 -0.061232 SEX X310-1 F -0.150308 -0.081041 966691 -0.069267 SEX X311-1 F -0.108713 -0.058213 802726 -0.050500 SEX X312-1 F -0.124459 -0.063338 929703 -0.061122 SEX X313-1 F -0.116524 -0.059657 1553500 -0.056867 SEX X314-1 F -0.150194 -0.079231 1465746 -0.070963 SEX X315-1 F -0.174112 -0.094495 2317879 -0.079617 SEX X316-1 F -0.175736 -0.093395 2385591 -0.082342 SEX X317-1 F -0.146604 -0.078555 1441560 -0.068049 SEX X318-1 F -0.138125 -0.072226 1363271 -0.065899 SEX X319-1 F -0.137082 -0.071461 1894621 -0.065620 SEX X320-1 F -0.121098 -0.064033 1127240 -0.057065 SEX X321-1 F -0.158934 -0.083841 1412566 -0.075093 SEX X322-1 F -0.117509 -0.059458 1477374 -0.058051 SEX X323-1 F -0.123783 -0.064213 1539808 -0.059570 SEX X324-1 F -0.139624 -0.070227 2351972 -0.069397 SEX X325-1 F -0.154188 -0.079287 2343456 -0.074902 SEX X326-1 F -0.143326 -0.075417 1336042 -0.067909 SEX X327-1 F -0.154371 -0.078510 2317741 -0.075862 SEX X328-1 F -0.132314 -0.068013 1283539 -0.064301 SEX X329-1 F -0.099952 -0.047786 2225322 -0.052166 SEX X330-1 F -0.113833 -0.054547 2405292 -0.059286 SEX X331-1 F -0.127885 -0.062203 2232974 -0.065682 SEX X332-1 F -0.107419 -0.054063 1539263 -0.053357 SEX X333-1 F -0.118444 -0.060593 1614679 -0.057851 SEX X334-1 F -0.116545 -0.058436 1342203 -0.058109 SEX X335-1 F -0.129098 -0.063576 2430226 -0.065522 SEX X336-1 F -0.112488 -0.058138 1509192 -0.054350 SEX X337-1 F -0.119065 -0.059523 2332772 -0.059542 SEX X339-1 F -0.121113 -0.060639 1364076 -0.060474 SEX X340-1 F -0.136505 -0.067688 2452896 -0.068818 SEX X341-1 F -0.130443 -0.067469 1508750 -0.062974 SEX X342-1 F -0.136346 -0.067253 2409783 -0.069093 SEX X343-1 F -0.124895 -0.065449 1386174 -0.059446 SEX X344-1 F -0.148653 -0.076466 2450115 -0.072187 SEX X345-1 F -0.141971 -0.072375 2341581 -0.069596 SEX X346-1 F -0.149215 -0.076797 2096643 -0.072418 SEX X347-1 F -0.144041 -0.072984 2436796 -0.071058 SEX X348-1 F -0.141805 -0.070895 2307647 -0.070910 SEX X349-1 F -0.145433 -0.072845 1676305 -0.072588 SEX X350-1 F -0.134376 -0.070067 1446381 -0.064309 SEX X351-1 F -0.145263 -0.072591 2315295 -0.072671 SEX X352-1 F -0.133567 -0.069969 1501402 -0.063597 SEX X353-1 F -0.153934 -0.078214 2231256 -0.075720 SEX X354-1 F -0.132307 -0.069717 1442291 -0.062591 SEX X355-1 F -0.131769 -0.068765 1331214 -0.063004 SEX X356-1 F -0.123862 -0.065443 1435342 -0.058418 SEX X358-1 F -0.157133 -0.082378 1587969 -0.074755 SEX X359-1 F -0.144169 -0.072740 2174221 -0.071428 SEX X361-1 F -0.132533 -0.070354 1593171 -0.062179 SEX X362-1 F -0.152565 -0.078294 2234008 -0.074271 SEX X363-1 F -0.137899 -0.069844 2208476 -0.068055 SEX X364-1 F -0.134787 -0.067774 1311560 -0.067013 SEX X365-1 F 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-0.075323 SEX X387-1 F -0.142423 -0.072712 1193051 -0.069711 SEX X388-1 F -0.138080 -0.070599 1940922 -0.067481 SEX X389-1 F -0.147540 -0.076709 1329308 -0.070832 SEX X390-1 F -0.156150 -0.081006 1240835 -0.075144 SEX X391-1 F -0.123056 -0.063283 1434246 -0.059773 SEX X392-1 F -0.144670 -0.074475 1323080 -0.070195 SEX X393-1 F -0.144611 -0.076514 1312140 -0.068097 SEX X394-1 F -0.118397 -0.060558 1184437 -0.057840 SEX X395-1 F -0.134992 -0.070774 1106941 -0.064218 SEX X396-1 F -0.134489 -0.069760 1099401 -0.064730 SEX X397-1 F -0.121477 -0.063692 1448936 -0.057785 SEX X398-1 F -0.161592 -0.084357 1783335 -0.077235 SEX X399-1 F -0.155195 -0.082250 1365727 -0.072946 SEX X400-1 F -0.148089 -0.080012 1429809 -0.068077 SEX X401-1 F -0.121411 -0.064193 1417152 -0.057219 SEX X402-1 F -0.106968 -0.057148 1258083 -0.049820 SEX X403-1 F -0.127509 -0.062161 1636811 -0.065347 SEX X404-1 F -0.117672 -0.061655 883666 -0.056017 SEX X405-1 F -0.130046 -0.069103 1278861 -0.060944 SEX X406-1 F -0.148737 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X436-1 F -0.132858 -0.068954 1452943 -0.063905 SEX X437-1 F -0.148249 -0.077425 2148250 -0.070824 SEX X438-1 F -0.137159 -0.069493 1444620 -0.067665 SEX X439-1 F -0.121186 -0.061936 1327465 -0.059250 SEX X440-1 F -0.147258 -0.073721 2362556 -0.073538 SEX X441-1 F -0.124803 -0.064499 1453758 -0.060303 SEX X442-1 F -0.128157 -0.064573 2042981 -0.063584 SEX X443-1 F -0.134182 -0.071192 1389828 -0.062990 SEX X444-1 F -0.139948 -0.069796 2290119 -0.070153 SEX X445-1 F -0.140045 -0.073267 1300317 -0.066779 SEX X446-1 F -0.136692 -0.073535 1265222 -0.063157 SEX X447-1 F -0.131838 -0.068061 2123188 -0.063778 SEX X448-1 F -0.129394 -0.067153 1429885 -0.062242 SEX X449-1 F -0.134181 -0.070167 1439569 -0.064015 SEX X450-1 F -0.141283 -0.076125 1358590 -0.065158 SEX X451-1 F -0.146757 -0.073998 2349253 -0.072759 SEX X452-1 F -0.140798 -0.069953 2183401 -0.070844 SEX X453-1 F -0.151694 -0.078016 2216218 -0.073679 SEX X454-1 F -0.144554 -0.073687 2048893 -0.070867 SEX X455-1 F -0.152308 -0.079741 2141901 -0.072566 SEX X456-1 F -0.131508 -0.069451 1390220 -0.062056 SEX X457-1 F -0.137171 -0.068966 2183449 -0.068205 SEX X458-1 F -0.151434 -0.077768 1973988 -0.073666 SEX X460-1 F -0.155472 -0.078560 2073139 -0.076912 SEX X461-1 F -0.137444 -0.070638 1515688 -0.066807 SEX X462-1 F -0.142634 -0.073742 2214325 -0.068893 SEX X463-1 F -0.225470 -0.122075 2184321 -0.103395 SEX X464-1 F -0.212131 -0.112297 2306251 -0.099833 SEX X466-1 F -0.200052 -0.106782 2290197 -0.093271 SEX X467-1 F -0.157709 -0.081748 903895 -0.075961 SEX X469-1 F -0.172087 -0.087787 3115475 -0.084300 SEX X470-1 F -0.149756 -0.080262 1527718 -0.069494 SEX X471-1 F -0.195800 -0.103844 2577272 -0.091955 SEX X475-1 F -0.179790 -0.096203 1465532 -0.083588 SEX X476-1 F -0.188584 -0.103066 1426501 -0.085518 SEX X477-1 F -0.214156 -0.115652 2165724 -0.098503 SEX X478-1 F -0.182300 -0.098166 1346155 -0.084134 SEX X479-1 F -0.177702 -0.096056 1811401 -0.081645 SEX X480-1 F -0.164303 -0.089333 1377075 -0.074970 SEX X481-1 F 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X59-1 F -0.158824 -0.085040 1527705 -0.073784 SEX X60-1 F -0.132671 -0.073667 737683 -0.059005 SEX X61-1 F -0.140511 -0.074759 1083863 -0.065752 SEX X62-1 F -0.130790 -0.073232 782309 -0.057559 SEX X63-1 F -0.130468 -0.068275 1272170 -0.062193 SEX X64-1 F -0.128782 -0.072546 729817 -0.056236 SEX X65-1 F -0.130142 -0.067988 1350098 -0.062154 SEX X66-1 F -0.151945 -0.082749 1258266 -0.069196 SEX X67-1 F -0.172353 -0.091212 1282087 -0.081141 SEX X68-1 F -0.133224 -0.073113 805798 -0.060111 SEX X69-1 F -0.161632 -0.087782 1205869 -0.073850 SEX X70-1 F -0.161319 -0.087989 1159413 -0.073330 SEX X71-1 F -0.146167 -0.077040 1262655 -0.069127 SEX X72-1 F -0.148673 -0.078904 1227843 -0.069770 SEX X73-1 F -0.134346 -0.076575 771429 -0.057771 SEX X74-1 F -0.133868 -0.073964 802482 -0.059904 SEX X75-1 F -0.127289 -0.072313 793500 -0.054976 SEX X76-1 F -0.120138 -0.066790 835993 -0.053348 SEX X77-1 F -0.147292 -0.080559 749861 -0.066734 SEX X78-1 F -0.125980 -0.068362 765089 -0.057617 SEX X79-1 F 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-0.082531 -0.043717 863271 -0.038814 SEX X13 F -0.093237 -0.049959 1057341 -0.043279 SEX X21 F -0.094955 -0.048277 955228 -0.046678 SEX X31 F -0.094337 -0.044340 1443026 -0.049997 SEX X41 F -0.083427 -0.044744 1211457 -0.038683 SEX X51 F -0.098001 -0.045957 1841028 -0.052044 SEX X61 F -0.082015 -0.045036 1131062 -0.036979 SEX X71 F -0.076569 -0.042844 1177739 -0.033725 SEX X81 F -0.086422 -0.043657 1788544 -0.042765 SEX X91 F -0.092811 -0.044661 1932174 -0.048150 SEX X10-1 F -0.093513 -0.044443 1889344 -0.049070 SEX X11-1 F -0.093760 -0.044402 1960162 -0.049358 SEX X12-1 F -0.081904 -0.044926 1339504 -0.036978 SEX X13-1 F -0.087543 -0.043141 1903239 -0.044402 SEX X14-1 F -0.092838 -0.044326 1937726 -0.048512 SEX X15-1 F -0.105143 -0.048507 2087203 -0.056636 SEX X16-1 F -0.089780 -0.043084 1765237 -0.046696 SEX X17-1 F -0.085489 -0.045409 1170280 -0.040080 SEX X18_1 F -0.090240 -0.050890 1346399 -0.039350 SEX X19_1 F -0.098376 -0.047492 1978349 -0.050884 SEX X20-1 F -0.076436 -0.042679 813012 -0.033757 SEX X21-1 F -0.072789 -0.043306 839639 -0.029483 SEX X22-1 F -0.089871 -0.043362 1384744 -0.046509 SEX X23-1 F -0.067929 -0.040569 767116 -0.027360 SEX X24-1 F -0.067012 -0.040462 685172 -0.026550 SEX X25-1 F -0.065625 -0.039945 711591 -0.025679 SEX T1-1 F -0.080769 -0.040822 1197119 -0.039947 SEX T2-1 F -0.083680 -0.041389 1131082 -0.042291 SEX dmc-04-fca U 0.500000 0.500000 0 0.000000 SEX dmc-04-mca U 0.500000 0.500000 0 0.000000 SEX dmc-1001-fca U 0.500000 0.500000 0 0.000000 SEX dmc-1001-mca U 0.500000 0.500000 0 0.000000 SEX dmc-1206-fca U 0.500000 0.500000 0 0.000000 SEX dmc-1206-mca U 0.500000 0.500000 0 0.000000 SEX dmc-1305-fca U 0.500000 0.500000 0 0.000000 SEX dmc-1307-fca U 0.500000 0.500000 0 0.000000 SEX dmc-1307-mca U 0.500000 0.500000 0 0.000000 SEX dmc-15-fca U 0.500000 0.500000 0 0.000000 SEX dmc-15-mca U 0.500000 0.500000 0 0.000000 SEX dmc-1501-fca U 0.500000 0.500000 0 0.000000 SEX dmc-1702-mca U 0.500000 0.500000 0 0.000000 SEX dmc-1790-ca U 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0.500000 0 0.000000 SEX dmc-oca-06f U 0.500000 0.500000 0 0.000000 SEX dmc-oca-06m U 0.500000 0.500000 0 0.000000 SEX dmc-oca-1004f U 0.500000 0.500000 0 0.000000 SEX dmc-oca-1004m U 0.500000 0.500000 0 0.000000 SEX dmc-oca-103f U 0.500000 0.500000 0 0.000000 SEX dmc-oca-103m U 0.500000 0.500000 0 0.000000 SEX dmc-oca-1233f U 0.500000 0.500000 0 0.000000 SEX dmc-oca-1233m U 0.500000 0.500000 0 0.000000 SEX dmc-oca-1301f U 0.500000 0.500000 0 0.000000 SEX dmc-oca-1301m U 0.500000 0.500000 0 0.000000 SEX dmc-oca-1707f U 0.500000 0.500000 0 0.000000 SEX dmc-oca-1707m U 0.500000 0.500000 0 0.000000 SEX dmc-oca-1708m U 0.500000 0.500000 0 0.000000 SEX dmc-oca-1716f U 0.500000 0.500000 0 0.000000 SEX dmc-oca-1716m U 0.500000 0.500000 0 0.000000 SEX dmc-oca-1804f U 0.500000 0.500000 0 0.000000 SEX dmc-oca-1804m U 0.500000 0.500000 0 0.000000 SEX dmc-oca-1834f U 0.500000 0.500000 0 0.000000 SEX dmc-oca-1834m U 0.500000 0.500000 0 0.000000 SEX dmc-oca-701f U 0.500000 0.500000 0 0.000000 SEX dmc-oca-701m U 0.500000 0.500000 0 0.000000 SEX dmc-oca-702f U 0.500000 0.500000 0 0.000000 SEX dmc-oca-702m U 0.500000 0.500000 0 0.000000 SEX dmc-oca-906f U 0.500000 0.500000 0 0.000000 SEX dmc-oca-906m U 0.500000 0.500000 0 0.000000 SEX r.vasanthi U 0.500000 0.500000 0 0.000000 SEX t.ranganathi U 0.500000 0.500000 0 0.000000 SEX tf-014-42 U 0.500000 0.500000 0 0.000000 SEX tf-014-44 U 0.500000 0.500000 0 0.000000 SEX tf-015-45 U 0.500000 0.500000 0 0.000000 SEX tf-016-47 U 0.500000 0.500000 0 0.000000 SEX tf-016-48 U 0.500000 0.500000 0 0.000000 SEX tf-017-50 U 0.500000 0.500000 0 0.000000 SEX tf-017-51 U 0.500000 0.500000 0 0.000000 SEX tf-018-53 U 0.500000 0.500000 0 0.000000 SEX tf-018-54 U 0.500000 0.500000 0 0.000000 SEX tf-019-56 U 0.500000 0.500000 0 0.000000 SEX tf-019-57 U 0.500000 0.500000 0 0.000000 SEX tf-020-59 U 0.500000 0.500000 0 0.000000 SEX tf-020-60 U 0.500000 0.500000 0 0.000000 SEX tf-021-62 U 0.500000 0.500000 0 0.000000 SEX tf-021-63 U 0.500000 0.500000 0 0.000000 SEX tf-022-65 U 0.500000 0.500000 0 0.000000 SEX tf-022-66 U 0.500000 0.500000 0 0.000000 SEX tf-024-71 U 0.500000 0.500000 0 0.000000 SEX tf-024-72 U 0.500000 0.500000 0 0.000000 SEX tf-025-74 U 0.500000 0.500000 0 0.000000 SEX tf-025-75 U 0.500000 0.500000 0 0.000000 SEX tf-026-77 U 0.500000 0.500000 0 0.000000 SEX tf-026-78 U 0.500000 0.500000 0 0.000000 SEX tf-029-86 U 0.500000 0.500000 0 0.000000 SEX tf-029-87 U 0.500000 0.500000 0 0.000000 SEX tf-031-92 U 0.500000 0.500000 0 0.000000 SEX tf-031-93 U 0.500000 0.500000 0 0.000000 SEX tf-032-95 U 0.500000 0.500000 0 0.000000 SEX tf-032-96 U 0.500000 0.500000 0 0.000000 SEX tf-035-104 U 0.500000 0.500000 0 0.000000 SEX tf-035-105 U 0.500000 0.500000 0 0.000000 SEX tf-036-107 U 0.500000 0.500000 0 0.000000 SEX tf-036-108 U 0.500000 0.500000 0 0.000000 SEX tf-037-110 U 0.500000 0.500000 0 0.000000 SEX tf-037-111 U 0.500000 0.500000 0 0.000000 SEX tf-044-131 U 0.500000 0.500000 0 0.000000 SEX tf-044-132 U 0.500000 0.500000 0 0.000000 SEX tf-045-134 U 0.500000 0.500000 0 0.000000 SEX tf-045-135 U 0.500000 0.500000 0 0.000000 SEX tf-046-137 U 0.500000 0.500000 0 0.000000 SEX tf-046-138 U 0.500000 0.500000 0 0.000000 SEX tf-047-140 U 0.500000 0.500000 0 0.000000 SEX tf-047-141 U 0.500000 0.500000 0 0.000000 SEX tf-051-152-1 U 0.500000 0.500000 0 0.000000 SEX tf-051-153-1 U 0.500000 0.500000 0 0.000000 SEX tf-052-155 U 0.500000 0.500000 0 0.000000 SEX tf-052-156 U 0.500000 0.500000 0 0.000000 SEX tf001-01 U 0.500000 0.500000 0 0.000000 SEX tf001-02 U 0.500000 0.500000 0 0.000000 SEX tf005-13 U 0.500000 0.500000 0 0.000000 SEX tf005-14 U 0.500000 0.500000 0 0.000000 SEX tf009-25 U 0.500000 0.500000 0 0.000000 SEX tf009-26 U 0.500000 0.500000 0 0.000000 SEX tf011-32 U 0.500000 0.500000 0 0.000000 SEX tf011-33 U 0.500000 0.500000 0 0.000000 SEX tf013-38 U 0.500000 0.500000 0 0.000000 SEX tf013-39 U 0.500000 0.500000 0 0.000000 SEX tf014-41 U 0.500000 0.500000 0 0.000000

Apr 18 '21 05:04 toyanji

The outputs you showing are lengthy and not informative to debug the problem. Any chance you could make the VCFs available? small test case would be sufficient.

Sep 02 '21 13:09 pd3

Dear Sir, The server is not working in the university. So I won't be able to access it now. Once it becomes functional, I will send you.

Regards

Toyanji Joseph

On Thu, 2 Sep 2021, 19:29 Petr Danecek, @.***> wrote:

The outputs you showing are lengthy and not informative to debug the problem. Any chance you could make the VCFs available? small test case would be sufficient.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/samtools/bcftools/issues/1465#issuecomment-911716260, or unsubscribe https://github.com/notifications/unsubscribe-auth/AF5NFUKWK2XZ3LH6G7HGIMDT757NPANCNFSM423W4NJQ . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

Sep 02 '21 15:09 toyanji

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on imputing gender

This file was produced by: bcftools +guess-ploidy(1.12+htslib-1.12)

The command line was: bcftools +guess-ploidy -e 1e-3 -g hg19 -v -t GT /gv0/home/jibin/LAB_DATA_FUll/ALL_DATA/Toyanji1/ALL_DATA/ALLdata.vcf.gz

[1]SEX [2]Sample [3]Predicted sex [4]log P(Haploid)/nSites [5]log P(Diploid)/nSites [6]nSites [7]Score: F < 0 < M ($4-$5)

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