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Published 20 hours ago • verified publisher icon samtools

How to understand merge.txt in RoH

Open xingerguan opened this issue 4 years ago • 1 comments

I cannot find a readme file for RoH output and recently got puzzled with results in merged.txt. I always thought "0" means non-RoH for an individual and "1" means RoH for an individual. However, recently I ran RoH with multiple samples and found an example of a ~900,000 bp region reported as RoH in homo_range.txt but "0" in merged.txt in that region.

xingerguan avatar Jun 09 '20 19:06 xingerguan

It is possible you encountered a bug. Can you please share the output and the *.txt.gz files to reproduce the problem? If it is sensitive data, can you send me an email offline? The address is on my profile page. Thank you.

pd3 avatar Jun 16 '20 14:06 pd3