samsledje
how to generate the contact map figure of each prediction protein pair?
Thanks for your wonderfull software. I'm fresh in protein-protein interaction analysis. And I have run all the scripts in the dscript/tests/test_commands.py. However, I still didn't know how to create the beatutiful contact heatmap in your published paper?
The picture I want to draw ↓
The result file I generated↓
@samsledje ,Hi, I've already get the "test_predict.cmaps.h5" file, how can I read this file ?
@samsledje ,Hi, why my residule-residule contact heatmap like that ?↓
I just used the test data
and then plot heatmap directly
The first image is a figure from a paper, that compares both predicted and true contact maps. The additional features like the protein structures were put together manually. The image you show above is one such predicted contact map, that seems to be overestimating contacts. We do not expect that the D-SCRIPT contact maps will be 100% accurate, and this is likely what has happened in this case. You should be able to read the h5 file using the h5py package.
