Sam Hokin

Ahh, well happy to be the canary in the coal mine. In any case, it seems to be working for my purposes, so I'm not an asphyxiated canary.

Follow-up: running the same Linux binary (cufflinks-2.2.1.Linux_x86_64) downloaded from here, on a totally different system (Carnegie Memex rather than DNAnexus/Amazon EC) this bug does NOT reproduce: ``` tracking_id class_code nearest_ref_id...

@danielabutano we talked about this a while ago on the dev list and then I went on vacation. :) Thanks for the tip on where to look!

And here's a sample of data that is held by that data model: ``` id | 38202165 unit | TPM primaryidentifier | Gene expression atlas of pigeonpea Asha(ICPL87119) datasetid |...

Just saw this, Sergio! > * should the referenced type in ExpressionValue be a more generic bioentity? Yes. No reason for it to specifically be Gene. I'm not sure about...

Updates per Sergio's suggestions. ``` ```

FYI, this is my current model. I've got NCBI attributes in there (`sra`, `bioProject`, `bioSample`, `geoSeries`) as well as some others which should probably not be in the core model....

Interesting. But I think it makes sense to limit the "things that express" to sequence features, which proteins are not. Just enforcing the "central dogma" really. I think you can...

Thanks, Rachel. Yes, I had RNA-seq in mind with the proposal, since that's what we're storing in the LIS mines. One comment is that we should be sure to write...

BTW there are a few other minor updates as well, mainly adding optional parameters for the GFF3 loader properties in project.xml. Those are in the same code as the strain...