pysradb
pysradb copied to clipboard
Not all attributes are being exported
In the SRA db, in the run info, as well as in the XML, one can see variables such as "GISAID_Accession" and "SARS-CoV-2_diagnostic_pcr_Ct_value_1" for certain samples (below).
https://www.ncbi.nlm.nih.gov/sra/?term=SRR15168846
But when I extract the detailed data for this sample using:
pysradb metadata SRR15168847 --detailed | head
these attributes mentioned above, are missing from the pysradb output. Is there any way to retrieve ALL of the metadata? Or at least, specific attributes that are not included in the "detailed" setting?
I downloaded pysradb on Feb 12, 2024 via conda