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Not all attributes are being exported

Open returnOfTheYeti opened this issue 4 months ago • 6 comments

In the SRA db, in the run info, as well as in the XML, one can see variables such as "GISAID_Accession" and "SARS-CoV-2_diagnostic_pcr_Ct_value_1" for certain samples (below).

https://www.ncbi.nlm.nih.gov/sra/?term=SRR15168846

But when I extract the detailed data for this sample using:

pysradb metadata SRR15168847 --detailed | head

these attributes mentioned above, are missing from the pysradb output. Is there any way to retrieve ALL of the metadata? Or at least, specific attributes that are not included in the "detailed" setting?

I downloaded pysradb on Feb 12, 2024 via conda

returnOfTheYeti avatar Feb 12 '24 21:02 returnOfTheYeti