sahil seth

``` [root@650ee0cf2924 tmp]# flowr -v ultraseq::merge_sheets x=tumor___normal_1.mutect.txt .filter='judgement=='KEEP'' outfile=tmp.tsv args: -vultraseq::merge_sheetsx=tumor___normal_1.mutect.txt.filter=judgement==KEEPoutfile=tmp.tsv script_args: -v using func: ultraseq::merge_sheets with final args: x=tumor___normal_1.mutect.txt.filter=judgement==KEEPoutfile=tmp.tsv loading pkg: ultraseq Loading required package: assertthat ultraseq: genomic flows...

For example, funr calls a function, which fails. In this case the only relevant error is of that function. ``` flowr run try: flowr -h run to get more details...

Adapt to, some recent changes to staticdocs. Bug fix issue with multi-line descriptions.

create worldmap

1

I think need to replace color name in pkgDNLs_worldmapcolor (from blackcat to black). I get this error: Error in grid.Call.graphics(L_polygon, x$x, x$y, index) : invalid color name 'blackcat'

segmentation fault with wham-bam

4

I am seeing a segmentation fault: ``` $wham_dir/bin/WHAM-BAM -m 2 -q 15 -p 10 -x 4 -t $tbam -f $reflib \ 1> ${oprefix}_wham.vcf 2> ${oprefix}_wham.out Aborted (core dumped) less ${vcf}.out...

nvatom is trying to open a file which was recently deleted (and failing) [Enter steps to reproduce:] 1. ... 2. ... **Atom**: 1.15.0 x64 **Electron**: 1.3.13 **OS**: Mac OS X...