Singularity still calling docker

[fiddlinwill]

Hi, thank you for your time and work on this pipeline!

Our HPC cluster does not use docker and so I am using the --framework singularity option. However, it is not working on our system and I am getting the following error. Does the singularity option still require docker capability? Thank you!

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My command:

python /hpcdata/lpd_hi/Will/ssgenome/final_assembly_Strongy2.1_3k30xflye2.8/best_finder/Finder/run_finder --framework singularity --metadatafile Ss_best_metadata.csv --output_directory ss_best_finder_onlypennRNAseq --genome pilon124_round3_chromosomesnumbered.maskedsoft.fasta --genemark_path /sysapps/cluster/software/GeneMark-ES-suite/4.21 --genemark_license /sysapps/cluster/software/GeneMark-ES-suite/4.21/gm_key --cpu 16 --organism_model INV

Error:

Copying config a88d5db3ba done
Writing manifest to image destination Storing signatures 2023/01/26 13:24:09 info unpack layer: sha256:ea362f368469f909a95f9a6e54ebe0121ce0a8e3c30583dd9c5fb35b14544dec FATAL: While making image from oci registry: error fetching image to cache: while building SIF from layers: packer failed to pack: while unpacking tmpfs: error unpacking rootfs: unpack layer: unpack entry: bin: restore parent directory: restore xattr metadata: /hpcdata/scratch/searswj/tmp/build-temp-990069682/rootfs: unpriv.lsetxattr: invalid argument INFO: Downloading library image to tmp cache: /hpcdata/scratch/searswj/tmp/sbuild-tmp-cache-249568772 INFO: Converting OCI blobs to SIF format INFO: Starting build... 2023/01/26 13:25:53 info unpack layer: sha256:ea362f368469f909a95f9a6e54ebe0121ce0a8e3c30583dd9c5fb35b14544dec FATAL: Unable to handle docker://sagnikbanerjee15/finder:1.1.0 uri: while building SIF from layers: packer failed to pack: while unpacking tmpfs: error unpacking rootfs: unpack layer: unpack entry: bin: restore parent directory: restore xattr metadata: /hpcdata/scratch/searswj/tmp/build-temp-942281107/rootfs: unpriv.lsetxattr: invalid argument

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finder.err output

which: no docker in (/hpcdata/lpd_hi/Will/Apps/conda/bin:/hpcdata/lpd_hi/Will/Apps/conda/condabin:/cm/shared/apps/uge/8.6.15/bin/lx-amd64:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lpp/mmfs/bin:/opt/ibutils/bin:/sbin:/usr/sbin:/opt/puppetlabs/bin:/opt/dell/srvadmin/bin:/hpcdata/lpd_hi/Will/Apps:/hpcdata/lpd_hi/Will/Apps:/hpcdata/lpd_hi/Will/Apps/Finder-finder_v1.1.0:/nethome/searswj/.local/bin:/nethome/searswj/bin)