I'm not able to do the initial example.

[generalissimodeslock]

Good afternoon.

My name is Fernando, I'm from Brazil and a student of computational biology at Fiocruz. First of all, I would like to thank you for the initiative to create a software that could predict eukaryotic genes, which was praised by several researchers.

I have a problem, it might even be pathetic of me to do a simple execution using the suggested example.

I'm pasting here the command line I used:

finder -no_cleanup -mf example/Arabidopsis_thaliana_metadata.csv -n 4 -gdir_olego example/A_tha -out_dir example/FINDER_test_ARATH -g example/Arabidopsis_thaliana.TAIR10.dna_sm.toplevel.fa -p example/uniprot_ARATH.fasta -gdir_olego olego_index -preserve -pc_clean 1> example/FINDER_test_ARATH.output 2> example/FINDER_test_ARATH.error

Could you please tell me how to proceed, like this example, I'll get other complete genomes. I've been able to perform all the phases up to this point and I'm even embarrassed to ask the software creator for guidance. If possible, could you tell me what I should be aware of when I write the command line?

sorry for bothering and thank you very much for the information and for providing a very useful software