Finder on local data

[utritala]

Hello there,

Thank you for a wonderful software. I am trying to use finder with RNAseq data which resides on my local machine. From the logs it seems that its actually not running the STAR alignment but still producing the message that its running. For example:

2021-08-16 14:45:11,921 - finder -   INFO - STAR Round1 run for RSB01_1_cutadapt.fastq.gz completed
2021-08-16 14:45:12,347 - finder -   INFO - STAR Round1 run for RSB01_2_cutadapt.fastq.gz completed
2021-08-16 14:45:12,881 - finder -   INFO - STAR Round1 run for RSB02_1_cutadapt.fastq.gz completed
2021-08-16 14:45:13,418 - finder -   INFO - STAR Round1 run for RSB02_2_cutadapt.fastq.gz completed
2021-08-16 14:45:13,965 - finder -   INFO - STAR Round1 run for RSB03_1_cutadapt.fastq.gz completed
2021-08-16 14:45:14,629 - finder -   INFO - STAR Round1 run for RSB03_2_cutadapt.fastq.gz completed

Because, it's not producing any files, it ultimately finishes with errors.

The metadata file looks something like this:

BioProject,SRA Accession,Tissues,Description,Date,Read Length (bp),Ended,RNA-Seq,process,Location
BAT,RSB01_1_cutadapt.fastq.gz,Brain,Uninfected,,,PE,1,1,/lustre/analysis/annotation/RNAseq
BAT,RSB01_2_cutadapt.fastq.gz,Brain,Uninfected,,,PE,1,1,/lustre/analysis/annotation/RNAseq
BAT,RSB02_1_cutadapt.fastq.gz,Brain,Uninfected,,,PE,1,1,/lustre/analysis/annotation/RNAseq
BAT,RSB02_2_cutadapt.fastq.gz,Brain,Uninfected,,,PE,1,1,/lustre/analysis/annotation/RNAseq
BAT,RSB03_1_cutadapt.fastq.gz,Brain,Uninfected,,,PE,1,1,/lustre/analysis/annotation/RNAseq
BAT,RSB03_2_cutadapt.fastq.gz,Brain,Uninfected,,,PE,1,1,/lustre/analysis/annotation/RNAseq

May be the files are not picked up from the location? Any thoughts on this will be very valuable.

Thank you.