IndexError

[nick294]

Hi there. I've been having issues running both the example and on my own data, see below:

~/finder/finder -no_cleanup -mf ~/finder/example/Arabidopsis_thaliana_metadata.csv -n 6 -gdir_star /Volumes/TOSH_EXTERNAL/star_index_without_transcriptome_Arabid -out_dir /Volumes/TOSH_EXTERNAL/Finder_Output1 -g ~/finder/example/Arabidopsis_thaliana.TAIR10.dna_sm.toplevel.fa -p ~/finder/example/uniprot_ARATH.fasta -gdir_olego /Volumes/TOSH_EXTERNAL/olego_index_Arabid -preserve Traceback (most recent call last): File "/Users/nicklister/finder/finder", line 668, in <module> main() File "/Users/nicklister/finder/finder", line 606, in main validateCommandLineArguments(options,logger_proxy,logging_mutex) File "/Users/nicklister/finder/finder", line 181, in validateCommandLineArguments finder_directory=open(options.temp_dir+"/finding_finder","r").read().split(":")[-1].split()[-1].strip() IndexError: list index out of range

Any ideas what might be wrong with what I am doing?

Thanks, Nick