Redundant Comparison Shown

[DarioS]

I have a variable with two conditions. How to do an analysis of Yes-No, but not No-Yes? I want to avoid the redundant heatmap.

contrasts_oi = "'Yes-No'")
contrast_tbl = tibble(contrast = "Yes-No", group = "Yes")
Error in multi_nichenet_analysis(allHuman, "cellType", "samples", characteristic,  : 
  conditions written in contrasts_oi should be in the condition-indicating column! This is not the case.

One column is the mirror image of the other column and is unnecessary. Also AREG-EGFR has no difference between Up, Down. Why?

[browaeysrobin]

Hi @DarioS

Normally, you can do an analysis with only "Yes-No". The error message you got here is probably because of a typo in the contrast definition: contrasts_oi = "'Yes-No'") instead of contrasts_oi = ("'Yes-No'").

However, the main issue is the redundancy in the plot. Therefore, we will flag this issue as "enhancement" to add more flexibility in the plotting function to give users the option to make this plot non-redundant in case of 2 conditions.

[amarinderthind]

@browaeysrobin I also have the same problem. Will this be addressed soon?