FlowSOM

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Hi, There is an issue in https://github.com/ImmuneDynamics/Spectre/issues/169 that related to the following line https://github.com/saeyslab/FlowSOM/blob/ec21465eb612a1a74cbbb5bd2cb21953f540a8af/R/0_FlowSOM.R#L269 I think the & should be replaced by &&. Maybe the rest of the code should...

SamGG

Could you build a specific function for plotting of outliers?

2

Hi, I think it would be clearer and useful to thave a plot function outside of the TestOutliers function. From my experience, it is better to separate computation and graphics....

SamGG

We're trying to install FlowSOM on a Debian bullseye setup as part of a Docker build. FlowSOM takes a very long time to build (around 30-40 minutes) because it needs...

alex-l-kong

size is not part of MST anymore

2

I did rely on **MST$size** element in the returned object from BuildMST function. However, with the new version of FlowSOM (at least the one I did just install), size is...

gitdemont

Hi Sofie I saw in the function _AggregateFlowFrames_ that if you use custom markers in the _channels_ parameter, you will bump into the warning: "Files do not contain the same...

artuurC