I want to know the configuration of the people who run successfully

[sudo349]

I always have strange mistakes

[fedorn]

It's working for me with the following conda's environment.yml:

name: bio-embeddings
channels:
  - conda-forge
dependencies:
  - python
  - pip
  - cudatoolkit=11.6
  - jax<0.2.0
  - jaxlib=0.1.55
  - pip:
    - jax-unirep==1.0.3
    - bio-embeddings[all]
    - kaleido

[9las]

I got the following error using the above config: Could not build wheels for jsonnet, which is required to install pyproject.toml-based projects But solved it by adding jsonnet to dependencies.

Also it seems like you do not need to specify the version of cudatoolkit. The latest version (11.8.0) seems to work fine:

name: bio-embeddings
channels:
  - conda-forge
dependencies:
  - python
  - pip
  - jsonnet
  - cudatoolkit
  - jax<0.2.0
  - jaxlib=0.1.55
  - pip:
    - jax-unirep==1.0.3
    - bio-embeddings[all]
    - kaleido