Stuart Lee

We have some good material now for actually using plyranges thanks to the BiocWorkshops which should be linked in both the README and also the intro vignette. In my opinion,...

improve figures for vignette

1

The overlap diagrams are confusing... more cartoony ones like the bedtools documentation would be helpful.

- some functions have very sparse/unclear documentation, especially the `read_` methods. - formatting issues in documentation

other endomorphic methods

1

Some gaps in the API that are covered by GenomicRanges are `slidingWindows` and `tile`, we could make the following: `set_tiles` `set_windows`

parallelisation

2

from @lawremi: It would be interesting to explore an API based on BiocParallel; something like: Set the BiocParallelParam: parallelize(x, param) Specify chunking: chunk_by(x, variable) # often seqnames chunk_count(x, count) chunk_size(x,...

dplyr template?

4

Hi Bob, any thoughts on having basey equivalents of the dplyr core verbs? I'd be happy to put in a PR when I have time.