Stuart Lee

I think in the original API spec there was a split_alignments function, which I haven’t got around to implementing yet. ________________________________ From: Michael Lawrence Sent: Monday, 4 December 2017 4:27:21...

@lawremi i've implmented chop in https://github.com/sa-lee/plyranges/blob/operators-class/R/ranges-chop.R is that what you meant?

Sorry for taking so long to respond to this - I was keen to use GPos for some other analyses I was doing but found that large genomes were problematic...

So I'm imagining the design of this to look fairly similar to the (maybe even inherit from) `GroupedGenomicRanges` class except we have two additional slots: - a param which is...

Thanks for the report Steve, I'll try to get to this one on the weekend :)

So `dplyr::count` uses `dplyr::tally` and are not generic, so in principle these should work out of the box as they are just combinations of summarise and group by. However, they...

Hi there, I'm not sure exactly what a full join would look like? Could you provide a simple example? If it makes sense you are more than welcome to make...

Hi, no sorry! I'm pretty busy with other projects at the moment, but will see if I have time over the next couple of months to implement it.

This looks like it's on the right track! Take a look at https://github.com/sa-lee/plyranges/blob/ce998131510d1da7b3c9e47deba5946b5c33ab1d/R/ranges-overlap-joins-outer.R#L55-L86 which provides the template for doing the left outer join. You're basically adding an extra step to...

I've had a go of this now - see commit https://github.com/sa-lee/plyranges/commit/0fadb502928aa045fc24dbc5f4bb27d32cb804bd. I'm not sure if this is the kinda approach you were thinking, let me know. Here's an example of...