s849

Using tangram with HE samples - deconvolution

1

Hi, Thanks for developing this tool. I have scRNA-seq data and Visium data - but have HE, non-fluorescent images. I am wondering if I can run Tangram to integrate the...

Calculating end and starting points with Markov model

1

Hi all, I am running velocyto in R with no problems so far. I am interested in calculating starting and end points using the Markov model forward/backward diffusion. I know...

Hi all, Thank you for developing velocyto. In the past, I have successfully overlaid velocity vectors onto a Monocle trajectory. Now, I wanted to overlaid them onto UMAP. It worked...

Expected doublet rate question

1

Hi, Thank you for developing Scrublet. I am using a combined pipeline from your and Wagner's repositories and had a question about the expected doublet rate to identify putative doublets....

Hello, Thanks for developing novosparc. I have a couple of questions; **1.** I am first trying to run the example data - I am coming up with this error after...

Error running runSCENIC_3_scoreCells function

3

Hi SCENIC team, Thank you for developing SCENIC. I have encountered an error when running runSCENIC_3_scoreCells(scenicOptions, logMat). Specifically, the error is associated with the .openDev function. It says it cannot...