FastQC
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s-andrews
A quality control analysis tool for high throughput sequencing data
Which is the appropriate file to download and install for MacOS Monterey? I have been trying to install via command line but not successful.
Hello I am trying to run FastQC, but I have been receiving an error where file has failed to process. I have included the output below. ${PROG}/fastqc_v0.12.1/FastQC/fastqc AG2_R2_001.fastq.gz --extract -o...
Hi, I downloaded fastqc, but I have a problem when running it. There is a black window with only the QC icon appearing after that. P/S: I'm using openjdk version...
Hi, I was running fastqc on my computer and there is more than 200G left. I also run ulimit -c unlimited. But this problem still exists. fastqc Jag1-6_S6_L001_R1_001.fastq.gz --dir ./...
I faced with the problem of ignoring min_length argument. Problem arising both in version 0.11.9 and 0.12.1. Reports looks exactly the same either min_length value was set or not. However,...
Hi, With version 0.12.0, I cannot run fastqc on my fastq.gz files using my university's cluster. When I unzip the files, then it is possible. The error message that arises...
Our group has long generated FastQC reports for a single lane of sequencing at a time. Our sequencing provider is now only providing demultiplexed FASTQs, which means that we need...
Hello - FastqQC is a very useful tool we've used for years. I know you have the ZIP version to distribute the code and dependencies; however, it would be helpful...
Over the last week or so we've had multiple reports of people failing to download fastqc, these mostly seem to be from the states and are getting either extremely slow...
[Phred quality scores](https://en.wikipedia.org/wiki/Phred_quality_score) are log scores. A quality of 30 stands for a 1 in 1000 error rate. A quality of 10 stands for a 1 in 10 error rate....
