Can't run outside of directory

[mvelinder]

Can't run outside of the directory (that it was indexed in?)

[u0691312@puhi:rufus_1000g]$ ~/bin/giggle/bin/giggle search -i /uufs/chpc.utah.edu/common/home/u0691312/resources/reference/GTEx_sort_b/ -q 11404X2.bam.generator.V2.overlap.hashcount.fastq.bam.vcf.bed.gz -o -v
##2	223423891	223423891	2:223423891:0:24
giggle: Could not open file 'GTEx_sort/Brain_Hypothalamus_Analysis.v6p.egenes.txt.gz.bed.gz'
: No such file or directory