Rutger Fick issues

Results 35 issues of


                                            Rutger Fick

update sphinx

Calculating scalars for noddi-bingham distributions

issue copied from email from Faye McKenna. > I am using the Noddi-Bingham model (https://github.com/AthenaEPI/dmipy/blob/master/examples/example_noddi_bingham.ipynb) and see that the code outputs several parameters (psi, beta fraction, ODI etc) but not...

Adds CSD optimizer based on sum-of-squares.

Sum-of-squared constrained CSD

Following the work of Dr. Dela Haije, it is of interest to see if "true" positivity constrained CSD has an influence on microstructure prediction. This issue is to include the...

Replaces prints with logging module.

In preparation of pypi we change all prints to appropriate logging messages. closes #82

Pip install prep: prints to logging

replace all prints with logging in preparation to put dmipy in pypi

Axtiveax example

With #51 in place reproduce example similar to axcaliber one with activeax.

Bundle model should remove input model orientientations

The models inside a bundle model are assumed to be aligned - so they should not have individual orientations. The input orientations should therefore be linked to a `bundle_mu` parameter...

Fix sphinx docs

Update FOD vizualization

Dipy's visualization updated so replace all hcp examples like the one in mc-mdi.