Jue Ruan

There should be a bug in `wtcns`, please run it part by part. ```sh seq 0 99 | xargs -i echo wtcns -t 32 -i pwk_genome.lay -o pwk_genome.cns.{}.fa -P 100...

First, `wtcorr` is not necessary in smartdenovo. Second, wtdbg2 would be better to assemble lage/huge genomes.

Please give me more backward lines.

Maybe the contigs are too short, please set the option `u` to a small value (1 or 2) in `wtlay`. ```txt -u Min nodes of a layout to be output...

I am afraid not, the consensus step is highly required, also plus following polishing with other tools.

Unusually slow. Could you send me the first 10 sections, each beginning with `>`. ruanjue.big (AT) qq.com

This problem was caused by so looong reads now comparing to that at 2014 year. I used 20 bits (1Mb) to store the overlap length, which was thought to be...

What happened when execute `make sont.mak` ?

Sorry for late reply. Please use the c files directly. For citation, wtdbg2 paper is ok.

I haven't tested on nanopore Q20 data. Maybe you need to polish them first, or try `-x ont` or `-x sq`.