shinyapps-package-dependencies
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Published
20 hours ago •
rstudio
rstudio
deploy error in tiff.sh
I am trying to redeploy my shiny app to shinyapps.io as they upgraded base Python version to 3.8, but the process is abrupted with an error. Complete log is as follows:
> rsconnect::deployApp()
Preparing to deploy application...Update application currently deployed at
https://mpoltoradnev.shinyapps.io/particle_size_analyzer/? [Y/n] y
DONE
Uploading bundle for application: 3428026...DONE
Deploying bundle: 4170112 for application: 3428026 ...
Waiting for task: 863930079
building: Parsing manifest
building: Building image: 4749212
building: Installing system dependencies
################################ Begin Task Log ################################
[2021-02-02T06:59:31.510301668+0000] Execute script: packages/build/tiff.sh
+ set -e
+ apt-get update -qq
+ apt-get install -y libtiff-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
libjbig-dev libtiffxx5
The following NEW packages will be installed:
libjbig-dev libtiff5-dev libtiffxx5
0 upgraded, 3 newly installed, 0 to remove and 7 not upgraded.
Need to get 299 kB of archives.
After this operation, 1136 kB of additional disk space will be used.
Get:1 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 libjbig-dev amd64 2.1-3.1 [24.8 kB]
Get:2 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtiffxx5 amd64 4.0.6-1ubuntu0.7 [5598 B]
Get:3 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtiff5-dev amd64 4.0.6-1ubuntu0.7 [269 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 299 kB in 0s (17.7 MB/s)
Selecting previously unselected package libjbig-dev:amd64.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
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(Reading database ... 55%
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 122515 files and directories currently installed.)
Preparing to unpack .../libjbig-dev_2.1-3.1_amd64.deb ...
Unpacking libjbig-dev:amd64 (2.1-3.1) ...
Selecting previously unselected package libtiffxx5:amd64.
Preparing to unpack .../libtiffxx5_4.0.6-1ubuntu0.7_amd64.deb ...
Unpacking libtiffxx5:amd64 (4.0.6-1ubuntu0.7) ...
Selecting previously unselected package libtiff5-dev:amd64.
Preparing to unpack .../libtiff5-dev_4.0.6-1ubuntu0.7_amd64.deb ...
Unpacking libtiff5-dev:amd64 (4.0.6-1ubuntu0.7) ...
Processing triggers for libc-bin (2.23-0ubuntu11.2) ...
Processing triggers for man-db (2.7.5-1) ...
Setting up libjbig-dev:amd64 (2.1-3.1) ...
Setting up libtiffxx5:amd64 (4.0.6-1ubuntu0.7) ...
Setting up libtiff5-dev:amd64 (4.0.6-1ubuntu0.7) ...
Processing triggers for libc-bin (2.23-0ubuntu11.2) ...
[2021-02-02T06:59:35.929811841+0000] Execute script: packages/build/magick.sh
+ set -e
++ lsb_release -cs
+ OS_DISTRIBUTION=xenial
+ apt-get update -qq
+ apt-get install -y software-properties-common python-software-properties
Reading package lists...
Building dependency tree...
Reading state information...
software-properties-common is already the newest version (0.96.20.10).
The following additional packages will be installed:
python-apt python-pycurl
Suggested packages:
python-apt-dbg python-apt-doc libcurl4-gnutls-dev python-pycurl-dbg
python-pycurl-doc
The following NEW packages will be installed:
python-apt python-pycurl python-software-properties
0 upgraded, 3 newly installed, 0 to remove and 7 not upgraded.
Need to get 211 kB of archives.
After this operation, 966 kB of additional disk space will be used.
Get:1 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-apt amd64 1.1.0~beta1ubuntu0.16.04.11 [147 kB]
Get:2 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 python-pycurl amd64 7.43.0-1ubuntu1 [43.3 kB]
Get:3 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial-updates/universe amd64 python-software-properties all 0.96.20.10 [20.6 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 211 kB in 0s (10.2 MB/s)
Selecting previously unselected package python-apt.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 122587 files and directories currently installed.)
Preparing to unpack .../python-apt_1.1.0~beta1ubuntu0.16.04.11_amd64.deb ...
Unpacking python-apt (1.1.0~beta1ubuntu0.16.04.11) ...
Selecting previously unselected package python-pycurl.
Preparing to unpack .../python-pycurl_7.43.0-1ubuntu1_amd64.deb ...
Unpacking python-pycurl (7.43.0-1ubuntu1) ...
Selecting previously unselected package python-software-properties.
Preparing to unpack .../python-software-properties_0.96.20.10_all.deb ...
Unpacking python-software-properties (0.96.20.10) ...
Setting up python-apt (1.1.0~beta1ubuntu0.16.04.11) ...
Setting up python-pycurl (7.43.0-1ubuntu1) ...
Setting up python-software-properties (0.96.20.10) ...
+ '[' xenial '!=' bionic ']'
+ add-apt-repository -y ppa:cran/imagemagick
gpg: keyring `/tmp/tmpoi4m4mye/secring.gpg' created
gpg: keyring `/tmp/tmpoi4m4mye/pubring.gpg' created
gpg: requesting key 15B55A9F from hkp server keyserver.ubuntu.com
gpg: /tmp/tmpoi4m4mye/trustdb.gpg: trustdb created
gpg: key 15B55A9F: public key "Launchpad PPA for cran" imported
gpg: Total number processed: 1
gpg: imported: 1 (RSA: 1)
OK
+ apt-get update -qq
+ apt-get install -y libmagick++-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
gir1.2-freedesktop gir1.2-gdkpixbuf-2.0 gir1.2-rsvg-2.0 imagemagick-6-common
libdjvulibre-dev libdjvulibre-text libdjvulibre21 libexif-dev libexif12
libgdk-pixbuf2.0-dev libilmbase-dev libilmbase12 liblcms2-dev liblqr-1-0
liblqr-1-0-dev libmagick++-6-headers libmagick++-6.q16-7
libmagick++-6.q16-dev libmagickcore-6-arch-config libmagickcore-6-headers
libmagickcore-6.q16-3 libmagickcore-6.q16-3-extra libmagickcore-6.q16-dev
libmagickwand-6-headers libmagickwand-6.q16-3 libmagickwand-6.q16-dev
libopenexr-dev libopenexr22 librsvg2-2 librsvg2-common librsvg2-dev
libwmf-dev libwmf0.2-7
Suggested packages:
inkscape libjxr-tools librsvg2-bin librsvg2-doc libwmf-doc libwmf0.2-7-gtk
The following NEW packages will be installed:
gir1.2-freedesktop gir1.2-gdkpixbuf-2.0 gir1.2-rsvg-2.0 imagemagick-6-common
libdjvulibre-dev libdjvulibre-text libdjvulibre21 libexif-dev libexif12
libgdk-pixbuf2.0-dev libilmbase-dev libilmbase12 liblcms2-dev liblqr-1-0
liblqr-1-0-dev libmagick++-6-headers libmagick++-6.q16-7
libmagick++-6.q16-dev libmagick++-dev libmagickcore-6-arch-config
libmagickcore-6-headers libmagickcore-6.q16-3 libmagickcore-6.q16-3-extra
libmagickcore-6.q16-dev libmagickwand-6-headers libmagickwand-6.q16-3
libmagickwand-6.q16-dev libopenexr-dev libopenexr22 librsvg2-2
librsvg2-common librsvg2-dev libwmf-dev libwmf0.2-7
0 upgraded, 34 newly installed, 0 to remove and 7 not upgraded.
Need to get 21.2 MB of archives.
After this operation, 90.3 MB of additional disk space will be used.
Get:1 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 liblqr-1-0 amd64 0.4.2-2 [23.6 kB]
Get:2 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 libilmbase12 amd64 2.2.0-11ubuntu2 [71.4 kB]
Get:3 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 libilmbase-dev amd64 2.2.0-11ubuntu2 [70.8 kB]
Get:4 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libopenexr22 amd64 2.2.0-10ubuntu2.4 [593 kB]
Get:5 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libopenexr-dev amd64 2.2.0-10ubuntu2.4 [704 kB]
Get:6 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdjvulibre-text all 3.5.27.1-5ubuntu0.1 [49.4 kB]
Get:7 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdjvulibre21 amd64 3.5.27.1-5ubuntu0.1 [582 kB]
Get:8 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenia################################# End Task Log #################################
Error: Unhandled Exception: Child Task 863930080 failed: Error building image: Build exited with non-zero status: 1
There is hypothesis, that the error might be related to the tiff dependency on shinyapps.io. Can you please help me figure out, what might be the issue?
It looks like the log was truncated. Here is the full log output:
[2021-02-02T06:59:31.510301668+0000] Execute script: packages/build/tiff.sh
+ set -e
+ apt-get update -qq
+ apt-get install -y libtiff-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
libjbig-dev libtiffxx5
The following NEW packages will be installed:
libjbig-dev libtiff5-dev libtiffxx5
0 upgraded, 3 newly installed, 0 to remove and 7 not upgraded.
Need to get 299 kB of archives.
After this operation, 1136 kB of additional disk space will be used.
Get:1 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 libjbig-dev amd64 2.1-3.1 [24.8 kB]
Get:2 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtiffxx5 amd64 4.0.6-1ubuntu0.7 [5598 B]
Get:3 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libtiff5-dev amd64 4.0.6-1ubuntu0.7 [269 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 299 kB in 0s (17.7 MB/s)
Selecting previously unselected package libjbig-dev:amd64.
(Reading database ... 122515 files and directories currently installed.)
Preparing to unpack .../libjbig-dev_2.1-3.1_amd64.deb ...
Unpacking libjbig-dev:amd64 (2.1-3.1) ...
Selecting previously unselected package libtiffxx5:amd64.
Preparing to unpack .../libtiffxx5_4.0.6-1ubuntu0.7_amd64.deb ...
Unpacking libtiffxx5:amd64 (4.0.6-1ubuntu0.7) ...
Selecting previously unselected package libtiff5-dev:amd64.
Preparing to unpack .../libtiff5-dev_4.0.6-1ubuntu0.7_amd64.deb ...
Unpacking libtiff5-dev:amd64 (4.0.6-1ubuntu0.7) ...
Processing triggers for libc-bin (2.23-0ubuntu11.2) ...
Processing triggers for man-db (2.7.5-1) ...
Setting up libjbig-dev:amd64 (2.1-3.1) ...
Setting up libtiffxx5:amd64 (4.0.6-1ubuntu0.7) ...
Setting up libtiff5-dev:amd64 (4.0.6-1ubuntu0.7) ...
Processing triggers for libc-bin (2.23-0ubuntu11.2) ...
[2021-02-02T06:59:35.929811841+0000] Execute script: packages/build/magick.sh
+ set -e
++ lsb_release -cs
+ OS_DISTRIBUTION=xenial
+ apt-get update -qq
+ apt-get install -y software-properties-common python-software-properties
Reading package lists...
Building dependency tree...
Reading state information...
software-properties-common is already the newest version (0.96.20.10).
The following additional packages will be installed:
python-apt python-pycurl
Suggested packages:
python-apt-dbg python-apt-doc libcurl4-gnutls-dev python-pycurl-dbg
python-pycurl-doc
The following NEW packages will be installed:
python-apt python-pycurl python-software-properties
0 upgraded, 3 newly installed, 0 to remove and 7 not upgraded.
Need to get 211 kB of archives.
After this operation, 966 kB of additional disk space will be used.
Get:1 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-apt amd64 1.1.0~beta1ubuntu0.16.04.11 [147 kB]
Get:2 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 python-pycurl amd64 7.43.0-1ubuntu1 [43.3 kB]
Get:3 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial-updates/universe amd64 python-software-properties all 0.96.20.10 [20.6 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 211 kB in 0s (10.2 MB/s)
Selecting previously unselected package python-apt.
(Reading database ... 122587 files and directories currently installed.)
Preparing to unpack .../python-apt_1.1.0~beta1ubuntu0.16.04.11_amd64.deb ...
Unpacking python-apt (1.1.0~beta1ubuntu0.16.04.11) ...
Selecting previously unselected package python-pycurl.
Preparing to unpack .../python-pycurl_7.43.0-1ubuntu1_amd64.deb ...
Unpacking python-pycurl (7.43.0-1ubuntu1) ...
Selecting previously unselected package python-software-properties.
Preparing to unpack .../python-software-properties_0.96.20.10_all.deb ...
Unpacking python-software-properties (0.96.20.10) ...
Setting up python-apt (1.1.0~beta1ubuntu0.16.04.11) ...
Setting up python-pycurl (7.43.0-1ubuntu1) ...
Setting up python-software-properties (0.96.20.10) ...
+ '[' xenial '!=' bionic ']'
+ add-apt-repository -y ppa:cran/imagemagick
gpg: keyring `/tmp/tmpoi4m4mye/secring.gpg' created
gpg: keyring `/tmp/tmpoi4m4mye/pubring.gpg' created
gpg: requesting key 15B55A9F from hkp server keyserver.ubuntu.com
gpg: /tmp/tmpoi4m4mye/trustdb.gpg: trustdb created
gpg: key 15B55A9F: public key "Launchpad PPA for cran" imported
gpg: Total number processed: 1
gpg: imported: 1 (RSA: 1)
OK
+ apt-get update -qq
+ apt-get install -y libmagick++-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
gir1.2-freedesktop gir1.2-gdkpixbuf-2.0 gir1.2-rsvg-2.0 imagemagick-6-common
libdjvulibre-dev libdjvulibre-text libdjvulibre21 libexif-dev libexif12
libgdk-pixbuf2.0-dev libilmbase-dev libilmbase12 liblcms2-dev liblqr-1-0
liblqr-1-0-dev libmagick++-6-headers libmagick++-6.q16-7
libmagick++-6.q16-dev libmagickcore-6-arch-config libmagickcore-6-headers
libmagickcore-6.q16-3 libmagickcore-6.q16-3-extra libmagickcore-6.q16-dev
libmagickwand-6-headers libmagickwand-6.q16-3 libmagickwand-6.q16-dev
libopenexr-dev libopenexr22 librsvg2-2 librsvg2-common librsvg2-dev
libwmf-dev libwmf0.2-7
Suggested packages:
inkscape libjxr-tools librsvg2-bin librsvg2-doc libwmf-doc libwmf0.2-7-gtk
The following NEW packages will be installed:
gir1.2-freedesktop gir1.2-gdkpixbuf-2.0 gir1.2-rsvg-2.0 imagemagick-6-common
libdjvulibre-dev libdjvulibre-text libdjvulibre21 libexif-dev libexif12
libgdk-pixbuf2.0-dev libilmbase-dev libilmbase12 liblcms2-dev liblqr-1-0
liblqr-1-0-dev libmagick++-6-headers libmagick++-6.q16-7
libmagick++-6.q16-dev libmagick++-dev libmagickcore-6-arch-config
libmagickcore-6-headers libmagickcore-6.q16-3 libmagickcore-6.q16-3-extra
libmagickcore-6.q16-dev libmagickwand-6-headers libmagickwand-6.q16-3
libmagickwand-6.q16-dev libopenexr-dev libopenexr22 librsvg2-2
librsvg2-common librsvg2-dev libwmf-dev libwmf0.2-7
0 upgraded, 34 newly installed, 0 to remove and 7 not upgraded.
Need to get 21.2 MB of archives.
After this operation, 90.3 MB of additional disk space will be used.
Get:1 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 liblqr-1-0 amd64 0.4.2-2 [23.6 kB]
Get:2 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 libilmbase12 amd64 2.2.0-11ubuntu2 [71.4 kB]
Get:3 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 libilmbase-dev amd64 2.2.0-11ubuntu2 [70.8 kB]
Get:4 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libopenexr22 amd64 2.2.0-10ubuntu2.4 [593 kB]
Get:5 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libopenexr-dev amd64 2.2.0-10ubuntu2.4 [704 kB]
Get:6 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdjvulibre-text all 3.5.27.1-5ubuntu0.1 [49.4 kB]
Get:7 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdjvulibre21 amd64 3.5.27.1-5ubuntu0.1 [582 kB]
Get:8 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 libwmf0.2-7 amd64 0.2.8.4-10.5ubuntu1 [147 kB]
Get:9 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdjvulibre-dev amd64 3.5.27.1-5ubuntu0.1 [2387 kB]
Get:10 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libexif12 amd64 0.6.21-2ubuntu0.6 [78.5 kB]
Get:11 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libexif-dev amd64 0.6.21-2ubuntu0.6 [270 kB]
Get:12 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial-updates/main amd64 liblcms2-dev amd64 2.6-3ubuntu2.1 [4656 kB]
Get:13 http://ppa.launchpad.net/cran/imagemagick/ubuntu xenial/main amd64 imagemagick-6-common all 8:6.9.7.4+dfsg-16xenial0 [100 kB]
Get:14 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 liblqr-1-0-dev amd64 0.4.2-2 [71.3 kB]
Get:15 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial-updates/main amd64 librsvg2-2 amd64 2.40.13-3ubuntu0.2 [93.8 kB]
Get:16 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial-updates/main amd64 librsvg2-common amd64 2.40.13-3ubuntu0.2 [5038 B]
Get:17 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 gir1.2-freedesktop amd64 1.46.0-3ubuntu1 [5742 B]
Get:18 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial-updates/main amd64 gir1.2-gdkpixbuf-2.0 amd64 2.32.2-1ubuntu1.6 [8100 B]
Get:19 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial-updates/main amd64 gir1.2-rsvg-2.0 amd64 2.40.13-3ubuntu0.2 [3710 B]
Get:20 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgdk-pixbuf2.0-dev amd64 2.32.2-1ubuntu1.6 [44.3 kB]
Get:21 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial-updates/main amd64 librsvg2-dev amd64 2.40.13-3ubuntu0.2 [103 kB]
Get:22 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 libwmf-dev amd64 0.2.8.4-10.5ubuntu1 [170 kB]
Get:23 http://ppa.launchpad.net/cran/imagemagick/ubuntu xenial/main amd64 libmagickcore-6-arch-config amd64 8:6.9.7.4+dfsg-16xenial0 [65.4 kB]
Get:24 http://ppa.launchpad.net/cran/imagemagick/ubuntu xenial/main amd64 libmagickcore-6-headers all 8:6.9.7.4+dfsg-16xenial0 [47.0 kB]
Get:25 http://ppa.launchpad.net/cran/imagemagick/ubuntu xenial/main amd64 libmagickwand-6-headers all 8:6.9.7.4+dfsg-16xenial0 [10.6 kB]
Get:26 http://ppa.launchpad.net/cran/imagemagick/ubuntu xenial/main amd64 libmagick++-6-headers all 8:6.9.7.4+dfsg-16xenial0 [47.1 kB]
Get:27 http://ppa.launchpad.net/cran/imagemagick/ubuntu xenial/main amd64 libmagickcore-6.q16-3 amd64 8:6.9.7.4+dfsg-16xenial0 [4287 kB]
Get:28 http://ppa.launchpad.net/cran/imagemagick/ubuntu xenial/main amd64 libmagickwand-6.q16-3 amd64 8:6.9.7.4+dfsg-16xenial0 [784 kB]
Get:29 http://ppa.launchpad.net/cran/imagemagick/ubuntu xenial/main amd64 libmagick++-6.q16-7 amd64 8:6.9.7.4+dfsg-16xenial0 [674 kB]
Get:30 http://ppa.launchpad.net/cran/imagemagick/ubuntu xenial/main amd64 libmagickcore-6.q16-3-extra amd64 8:6.9.7.4+dfsg-16xenial0 [220 kB]
Get:31 http://ppa.launchpad.net/cran/imagemagick/ubuntu xenial/main amd64 libmagickcore-6.q16-dev amd64 8:6.9.7.4+dfsg-16xenial0 [3026 kB]
Get:32 http://ppa.launchpad.net/cran/imagemagick/ubuntu xenial/main amd64 libmagickwand-6.q16-dev amd64 8:6.9.7.4+dfsg-16xenial0 [918 kB]
Get:33 http://ppa.launchpad.net/cran/imagemagick/ubuntu xenial/main amd64 libmagick++-6.q16-dev amd64 8:6.9.7.4+dfsg-16xenial0 [904 kB]
Get:34 http://ppa.launchpad.net/cran/imagemagick/ubuntu xenial/main amd64 libmagick++-dev all 8:6.9.7.4+dfsg-16xenial0 [1336 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 21.2 MB in 5s (3724 kB/s)
Selecting previously unselected package liblqr-1-0:amd64.
(Reading database ... 122639 files and directories currently installed.)
Preparing to unpack .../liblqr-1-0_0.4.2-2_amd64.deb ...
Unpacking liblqr-1-0:amd64 (0.4.2-2) ...
Selecting previously unselected package imagemagick-6-common.
Preparing to unpack .../imagemagick-6-common_8%3a6.9.7.4+dfsg-16xenial0_all.deb ...
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Setting up libwmf0.2-7:amd64 (0.2.8.4-10.5ubuntu1) ...
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Setting up liblqr-1-0-dev (0.4.2-2) ...
Setting up librsvg2-2:amd64 (2.40.13-3ubuntu0.2) ...
Setting up librsvg2-common:amd64 (2.40.13-3ubuntu0.2) ...
Setting up gir1.2-freedesktop:amd64 (1.46.0-3ubuntu1) ...
Setting up gir1.2-gdkpixbuf-2.0:amd64 (2.32.2-1ubuntu1.6) ...
Setting up gir1.2-rsvg-2.0:amd64 (2.40.13-3ubuntu0.2) ...
Setting up libgdk-pixbuf2.0-dev (2.32.2-1ubuntu1.6) ...
Setting up librsvg2-dev:amd64 (2.40.13-3ubuntu0.2) ...
Setting up libwmf-dev (0.2.8.4-10.5ubuntu1) ...
Setting up libmagickcore-6.q16-dev:amd64 (8:6.9.7.4+dfsg-16xenial0) ...
Setting up libmagickwand-6.q16-dev:amd64 (8:6.9.7.4+dfsg-16xenial0) ...
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[2021-02-02T06:59:52.917999026+0000] Execute script: packages/build/igraph.sh
+ set -e
+ apt-get update -qq
+ apt-get install -y libglpk-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
libamd2.4.1 libbtf1.2.1 libcamd2.4.1 libccolamd2.9.1 libcholmod3.0.6
libcolamd2.9.1 libcsparse3.1.4 libcxsparse3.1.4 libglpk36 libgmp-dev
libgmpxx4ldbl libklu1.3.3 libldl2.2.1 libspqr2.0.2 libsuitesparse-dev
libsuitesparseconfig4.4.6 libumfpack5.7.1
Suggested packages:
libiodbc2-dev gmp-doc libgmp10-doc libmpfr-dev
The following NEW packages will be installed:
libamd2.4.1 libbtf1.2.1 libcamd2.4.1 libccolamd2.9.1 libcholmod3.0.6
libcolamd2.9.1 libcsparse3.1.4 libcxsparse3.1.4 libglpk-dev libglpk36
libgmp-dev libgmpxx4ldbl libklu1.3.3 libldl2.2.1 libspqr2.0.2
libsuitesparse-dev libsuitesparseconfig4.4.6 libumfpack5.7.1
0 upgraded, 18 newly installed, 0 to remove and 7 not upgraded.
Need to get 2864 kB of archives.
After this operation, 12.2 MB of additional disk space will be used.
Get:1 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 libsuitesparseconfig4.4.6 amd64 1:4.4.6-1 [9322 B]
Get:2 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 libamd2.4.1 amd64 1:4.4.6-1 [21.3 kB]
Get:3 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 libbtf1.2.1 amd64 1:4.4.6-1 [10.8 kB]
Get:4 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 libcamd2.4.1 amd64 1:4.4.6-1 [20.0 kB]
Get:5 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 libccolamd2.9.1 amd64 1:4.4.6-1 [21.5 kB]
Get:6 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 libcolamd2.9.1 amd64 1:4.4.6-1 [15.7 kB]
Get:7 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 libcholmod3.0.6 amd64 1:4.4.6-1 [293 kB]
Get:8 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 libcsparse3.1.4 amd64 1:4.4.6-1 [26.3 kB]
Get:9 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 libcxsparse3.1.4 amd64 1:4.4.6-1 [62.8 kB]
Get:10 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/universe amd64 libglpk36 amd64 4.57-1build3 [386 kB]
Get:11 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 libgmpxx4ldbl amd64 2:6.1.0+dfsg-2 [8948 B]
Get:12 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 libgmp-dev amd64 2:6.1.0+dfsg-2 [314 kB]
Get:13 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 libklu1.3.3 amd64 1:4.4.6-1 [71.5 kB]
Get:14 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 libldl2.2.1 amd64 1:4.4.6-1 [10.6 kB]
Get:15 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 libumfpack5.7.1 amd64 1:4.4.6-1 [223 kB]
Get:16 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 libspqr2.0.2 amd64 1:4.4.6-1 [63.6 kB]
Get:17 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 libsuitesparse-dev amd64 1:4.4.6-1 [899 kB]
Get:18 http://us-east-1.ec2.archive.ubuntu.com/ubuntu xenial/universe amd64 libglpk-dev amd64 4.57-1build3 [408 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libsuitesparseconfig4.4.6:amd64 (1:4.4.6-1) ...
Setting up libamd2.4.1:amd64 (1:4.4.6-1) ...
Setting up libbtf1.2.1:amd64 (1:4.4.6-1) ...
Setting up libcamd2.4.1:amd64 (1:4.4.6-1) ...
Setting up libccolamd2.9.1:amd64 (1:4.4.6-1) ...
Setting up libcolamd2.9.1:amd64 (1:4.4.6-1) ...
Setting up libcholmod3.0.6:amd64 (1:4.4.6-1) ...
Setting up libcsparse3.1.4:amd64 (1:4.4.6-1) ...
Setting up libcxsparse3.1.4:amd64 (1:4.4.6-1) ...
Setting up libglpk36:amd64 (4.57-1build3) ...
Setting up libgmpxx4ldbl:amd64 (2:6.1.0+dfsg-2) ...
Setting up libgmp-dev:amd64 (2:6.1.0+dfsg-2) ...
Setting up libklu1.3.3:amd64 (1:4.4.6-1) ...
Setting up libldl2.2.1:amd64 (1:4.4.6-1) ...
Setting up libumfpack5.7.1:amd64 (1:4.4.6-1) ...
Setting up libspqr2.0.2:amd64 (1:4.4.6-1) ...
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Processing triggers for libc-bin (2.23-0ubuntu11.2) ...
[2021-02-02T06:59:56.713136490+0000] Execute script: packages/build/tensorflow.sh
+ set -e
+ curl -O https://bootstrap.pypa.io/get-pip.py
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 1884k 100 1884k 0 0 7349k 0 --:--:-- --:--:-- --:--:-- 7361k
+ python get-pip.py
Traceback (most recent call last):
File "get-pip.py", line 24244, in <module>
main()
File "get-pip.py", line 199, in main
bootstrap(tmpdir=tmpdir)
File "get-pip.py", line 82, in bootstrap
from pip._internal.cli.main import main as pip_entry_point
File "/tmp/tmpOP1EPY/pip.zip/pip/_internal/cli/main.py", line 60
sys.stderr.write(f"ERROR: {exc}")
^
SyntaxError: invalid syntax
This is a duplicate of #269. That issue has been closed, but it still being tested.
@kippandrew, thank you for detailed response. Looking forward to hear the good news soon!