Error in terminal window - getcwd() failed: No such file or directory

[dkincaid]

I'm getting the following error in the terminal pane when submitting a job. The job gets submitted and runs, but the results aren't collected back to the local system automatically. Do I have to manually make sure that some directory exists before using cloudml_train()?

143218205 --polling-interval=5 ; "/usr/lib/R/bin/Rscript" -e "cloudml::job_collect('cloudml_2018_08_09_143218205', destination = '/home/davek/R/cloudml-testing/runs', view = 'save')" ; "/usr/lib/R/bin/Rscript" -e "utils::browseURL('/home/davek/R/cloudml-testing/runs/cloudml_2018_08_09_143218205/tfruns.d/view.html')"
sh: 0: getcwd() failed: No such file or directory
sh: 0: getcwd() failed: No such file or directory
Traceback (most recent call last):
  File "/home/davek/.virtualenvs/r-tensorflow/lib/python2.7/site.py", line 703, in <module>
    main()
  File "/home/davek/.virtualenvs/r-tensorflow/lib/python2.7/site.py", line 672, in main
    paths_in_sys = removeduppaths()
  File "/home/davek/.virtualenvs/r-tensorflow/lib/python2.7/site.py", line 124, in removeduppaths
    dir, dircase = makepath(dir)
  File "/home/davek/.virtualenvs/r-tensorflow/lib/python2.7/site.py", line 97, in makepath
    dir = os.path.abspath(dir)
  File "/home/davek/.virtualenvs/r-tensorflow/lib/python2.7/posixpath.py", line 364, in abspath
    cwd = os.getcwd()
OSError: [Errno 2] No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
sh: 0: getcwd() failed: No such file or directory
sh: 0: getcwd() failed: No such file or directory
Error: ERROR: gcloud invocation failed [exit status 1]

[command]
/home/davek/google-cloud-sdk/bin/gcloud config get-value account

[output]


[errmsg]
sh: 0: getcwd() failed: No such file or directory
sh: 0: getcwd() failed: No such file or directory
Traceback (most recent call last):
  File "/home/davek/.virtualenvs/r-tensorflow/lib/python2.7/site.py", line 703, in <module>
    main()
  File "/home/davek/.virtualenvs/r-tensorflow/lib/python2.7/site.py", line 672, in main
    paths_in_sys = removeduppaths()
  File "/home/davek/.virtualenvs/r-tensorflow/lib/python2.7/site.py", line 124, in removeduppaths
    dir, dircase = makepath(dir)
  File "/home/davek/.virtualenvs/r-tensorflow/lib/python2.7/site.py", line 97, in makepath
    dir = os.path.abspath(dir)
  File "/home/davek/.virtualenvs/r-tensorflow/lib/python2.7/posixpath.py", line 364, in abspath
    cwd = os.getcwd()
OSError: [Errno 2] No such file or directory
Execution halted
sh: 0: getcwd() failed: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
sh: 0: getcwd() failed: No such file or directory
sh: 0: getcwd() failed: No such file or directory
➜  . sh: 0: getcwd() failed: No such file or directory
gio: file:///home/davek/R/cloudml-testing/runs/cloudml_2018_08_09_143218205/tfruns.d/view.html: Error when getting information for file “/home/davek/R/cloudml-testing/runs/cloudml_2018_08_09_143218205/tfruns.d/view.html”: No such file or directory

I can run job_collect() and then view the job after it is complete. It's just that the collect isn't run automatically.

session info:

> sessionInfo()
R version 3.4.4 (2018-03-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.1 LTS

Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/libopenblasp-r0.2.20.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8    LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C             LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] bindrcpp_0.2.2     purrr_0.2.5        ggplot2_2.2.1.9000 dplyr_0.7.6        keras_2.1.6.9005  
[6] cloudml_0.5.1.9000 tfruns_1.3        

loaded via a namespace (and not attached):
 [1] Rcpp_0.12.18          plyr_1.8.4            compiler_3.4.4        pillar_1.2.1         
 [5] bindr_0.1.1           base64enc_0.1-3       tools_3.4.4           packrat_0.4.9-3      
 [9] digest_0.6.15         zeallot_0.1.0         jsonlite_1.5          tibble_1.4.2         
[13] gtable_0.2.0          lattice_0.20-35       debugme_1.1.0         pkgconfig_2.0.1      
[17] rlang_0.2.1           Matrix_1.2-12         rstudioapi_0.7        yaml_2.2.0           
[21] stringr_1.3.1         withr_2.1.2           rprojroot_1.3-2       grid_3.4.4           
[25] tidyselect_0.2.4      reticulate_1.9.0.9002 glue_1.3.0            R6_2.2.2             
[29] processx_3.1.0        reshape2_1.4.3        magrittr_1.5          whisker_0.3-2        
[33] backports_1.1.2       scales_0.5.0.9000     assertthat_0.2.0      colorspace_1.3-2     
[37] labeling_0.3          tensorflow_1.8.0.9006 config_0.3            stringi_1.2.3        
[41] lazyeval_0.2.1        munsell_0.5.0         crayon_1.3.4