Porechop icon indicating copy to clipboard operation
Porechop copied to clipboard

Running pore adaptor on 1 D^2 data

Open kanchanhole opened this issue 7 years ago • 0 comments

Hello, 1. I am running porechop on 1 D^2 data using the following command.

porechop -i input_reads.fastq.gz -o output_reads.fastq.gz

For 1D ~98% reads were trimmed for adaptors. however, for 1D^2 only ~ 65% reads were trimmed for adaptors.

I am unable to understand why is there this difference?

  1. Is there any way to see which adaptor porechop is trimming?

kanchanhole avatar Feb 26 '18 16:02 kanchanhole