Porechop

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error: [Errno 2] No such file or directory: 'porechop/cpp_functions.so'

5

Executed python3 setup.py install --user and encountered this issue during installation: ``` running install_egg_info running egg_info writing porechop.egg-info/PKG-INFO writing dependency_links to porechop.egg-info/dependency_links.txt writing entry points to porechop.egg-info/entry_points.txt writing top-level names...

EPKok

Adapters problem

10

Hello, I’m working with the SQL-LSK 108 Kit and I have tried to add the adapter of this kit. However after including the new adapter in the adapter.py and start...

Raistrawby

Custom adapters cannot be found when binning but can be found using trimming function

1

Hi! I input custom adapter using adapter.py, these adapters can be found if i use -o function for trimming "30,139 / 32,299 reads had adapters trimmed from their end (2,444,748...

v1tazhan9

The app fails to zip the output as it returns 'non-zero exit status 2'. Innitialy, it failed when executing gzip, as pigz were not installed. After installing pigz, the error...

Lukas-Vasionis

Number of reads increased after Porechop

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Hi, I have been using porechop to trim my nanopore generated raw reads and i noticed that after trimming the number of total bases reduces, but the number of total...

sumitra20

I can't install porechop using conda I already have my conda env activated but when I run : **conda install -c bioconda porechop** I have this error : Collecting package...

saassli21

Citing Porechop

5

How would like to have pore chop referenced in a manuscript?

bluessherpa

Demultiplexing - barcode bins

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Dear, I am new to nanopore community and have some questions. I might sound silly! We preapred nanopore librariy using 1-24 SQK-16S024 kit for 24 samples. After sequencing, i got...

mzakram219

Hi! Can you recommend a video to learn how to use porechop?

1

Hi! Can you recommend a video to learn how to use porechop? I have not found a video that explains how to install and process the data with porechop. I...

paulinconir

Lambda SQK-NSK007 and crossbarcoding detection

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Hi, I´m running porechop and used multiplex outpu on one sample that was built with barcode01 only. Here below the results. From the image below it looks that porechop is...

davidvilanova