Filtlong
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Error: incorrect FASTQ format
I tried to filter the raw data SRR14458708 from this paper.
Data download: SRA
Extraction:
$ docker run -v .:/data -it staphb/sratoolkit bash
(docker)$ fastq-dump -I --split-files SRR14458708
Filtlong:
$ docker run -v .:/data -it staphb/filtlong bash
(docker)$ filtlong --min_length 1000 --keep_percent 90 DZ2-SRR14458708_1.fastq
Scoring long reads
630513 reads (3002114721 bp)Error: incorrect FASTQ format for read DZ2-SRR14458708.630514.1
What does that mean?